View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17381_high_4 (Length: 309)
Name: NF17381_high_4
Description: NF17381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17381_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 20 - 298
Target Start/End: Original strand, 414262 - 414546
Alignment:
| Q |
20 |
aattatcccataaataaatgctctcaattcgtttcattacatcattctctcatttcgatttcaaatctcactttcttctcttttct------tccgccgc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
414262 |
aattatcccataaataaatgctctcaattcgtttcattacatcattctctcatttcaatttcaaatctcactttcttctcttttcttcttcttccgccgc |
414361 |
T |
|
| Q |
114 |
aaccatgtcatccaccaccgcaaccaacgccgtctccgccacagatgatgcgaaacacggtttctctcgtcctgagatgtacaaagaaaacctcgctgga |
213 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
414362 |
aaccatgtcatccaccaccgcaaccgacgccgtctccgccacagatgatgcgaaacacggtttctctcgtcctgagatgtacaaagaaaacctcgctgga |
414461 |
T |
|
| Q |
214 |
accgtagcttcttacgatcgtcacgtttttctctgttacaagaatcgtcaaacttggcctccgcgtcttgaagcttctgatgatg |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
414462 |
accgtagcttcttacgatcgtcacgtttttctctgttacaagaatcgtcaaacttggcctccgcgtcttgaagcttctgatgatg |
414546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 296
Target Start/End: Complemental strand, 401202 - 401079
Alignment:
| Q |
173 |
gtttctctcgtcctgagatgtacaaagaaaacctcgctggaaccgtagcttcttacgatcgtcacgtttttctctgttacaagaatcgtcaaacttggcc |
272 |
Q |
| |
|
||||||| ||| |||||||||||| ||||||| |||||||| || | || ||||||||||| || ||||| ||||||||||| | ||||||||||| |
|
|
| T |
401202 |
gtttctcccgttatgagatgtacaagcaaaaccttgctggaacagttgaatcctacgatcgtcatgtctttctatgttacaagaaccaccaaacttggcc |
401103 |
T |
|
| Q |
273 |
tccgcgtcttgaagcttctgatga |
296 |
Q |
| |
|
|||| || ||||||| || ||||| |
|
|
| T |
401102 |
tccgtgtgttgaagcctccgatga |
401079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University