View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17381_high_8 (Length: 246)
Name: NF17381_high_8
Description: NF17381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17381_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 30828282 - 30828504
Alignment:
| Q |
11 |
cataggctaagcaagcacgattcaaacacaaacacggtatacgagtcgacactgacacgtctacatcgataataatttaaaataagattaattaactgaa |
110 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
30828282 |
cataggttaagcaagcacgattcaaacacaaacacggtatacgagtcgacactgacacgtctacatcaataataatttaaaataaaattaattaactgaa |
30828381 |
T |
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| Q |
111 |
ttagttatagagattaagtaaccacgccctttgtactttaaatatctaaattgttaaagagtctctcacaccggatgagatatggtccaaaaatgatttt |
210 |
Q |
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||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30828382 |
ttagttatagagactaagtaaccacgctcttcgtactttaaatatataaattgttaaagaatctctcacaccggatgagatatggtccaaaaatgatttt |
30828481 |
T |
|
| Q |
211 |
ataaaggaagcaacttccacctt |
233 |
Q |
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||||||||||||||||||||||| |
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| T |
30828482 |
ataaaggaagcaacttccacctt |
30828504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 233
Target Start/End: Original strand, 30853175 - 30853397
Alignment:
| Q |
11 |
cataggctaagcaagcacgattcaaacacaaacacggtatacgagtcgacactgacacgtctacatcgataataatttaaaataagattaattaactgaa |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
30853175 |
cataggttaagcaagcacgattcaaacacaaacacggtatacgagtcgacactgacacgtctacatcaataataatttaaaataaaattaattaactgaa |
30853274 |
T |
|
| Q |
111 |
ttagttatagagattaagtaaccacgccctttgtactttaaatatctaaattgttaaagagtctctcacaccggatgagatatggtccaaaaatgatttt |
210 |
Q |
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||||||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30853275 |
ttagttatagagactaagtaaccacgctcttcgtactttaaatatataaattgttaaagaatctctcacaccggatgagatatggtccaaaaatgatttt |
30853374 |
T |
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| Q |
211 |
ataaaggaagcaacttccacctt |
233 |
Q |
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||||||||||||||||||||||| |
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| T |
30853375 |
ataaaggaagcaacttccacctt |
30853397 |
T |
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