View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17381_low_2 (Length: 332)
Name: NF17381_low_2
Description: NF17381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17381_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 25 - 320
Target Start/End: Original strand, 39073306 - 39073601
Alignment:
| Q |
25 |
tcttcatcaggttcactcagtgacatcttagggatccatcgaatcgaagacgtagaagaacaagaagaagagttaggagctatgaaggaaatgatgtaca |
124 |
Q |
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| T |
39073306 |
tcttcatcaggttcactcagtgacatcttagggatccatcgaatcgaagacgtagaagaacaagaagaagagttaggagctatgaaggaaatgatgtaca |
39073405 |
T |
|
| Q |
125 |
agattgcagctatgcaaccggtggacatcgacccagcaacgattcgaaaaccaaaacgaagaaacgttcgaatcagcgaagatccacaaagtgttgcagc |
224 |
Q |
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| T |
39073406 |
agattgcagctatgcaaccggtggacatcgacccagcaacgattcgaaaaccaaaacgaagaaacgttcgaatcagcgaagatccacaaagtgttgcagc |
39073505 |
T |
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| Q |
225 |
tagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatga |
320 |
Q |
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| T |
39073506 |
tagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatga |
39073601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 205 - 312
Target Start/End: Original strand, 6259580 - 6259687
Alignment:
| Q |
205 |
gatccacaaagtgttgcagctagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacag |
304 |
Q |
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| T |
6259580 |
gatccacaaagtgtagcagcaagacatagaagagaaagaattagtgaaagaataaggatattacaaagattagtacctggtggaacaaaaatggacactg |
6259679 |
T |
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| Q |
305 |
cttctatg |
312 |
Q |
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| T |
6259680 |
cttctatg |
6259687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 46899304 - 46899403
Alignment:
| Q |
203 |
aagatccacaaagtgttgcagctagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatac |
302 |
Q |
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| T |
46899304 |
aagatcctcagagtatagcagctagacacagaagagaaagaataagcgagaaaataagaatactgcaaagaatggtaccaggtggaactaaaatggatac |
46899403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 25645321 - 25645275
Alignment:
| Q |
205 |
gatccacaaagtgttgcagctagacatagaagagaaagaatcagtga |
251 |
Q |
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| T |
25645321 |
gatccacaaagtgttgcagctagagaaagaagacatagaatcagtga |
25645275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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