View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17381_low_4 (Length: 323)

Name: NF17381_low_4
Description: NF17381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17381_low_4
NF17381_low_4
[»] chr1 (10 HSPs)
chr1 (11-286)||(30827106-30827380)
chr1 (12-87)||(29658792-29658867)
chr1 (12-87)||(29691307-29691382)
chr1 (12-87)||(29718819-29718894)
chr1 (15-86)||(33160702-33160773)
chr1 (93-175)||(29659026-29659108)
chr1 (23-80)||(19468340-19468397)
chr1 (20-76)||(9581276-9581332)
chr1 (20-76)||(9586844-9586900)
chr1 (93-161)||(29719053-29719121)
[»] chr6 (1 HSPs)
chr6 (15-81)||(6594439-6594505)
[»] chr4 (3 HSPs)
chr4 (21-89)||(10634273-10634341)
chr4 (24-83)||(55908567-55908626)
chr4 (23-87)||(570542-570606)
[»] chr2 (1 HSPs)
chr2 (24-83)||(1037503-1037562)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-145; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 286
Target Start/End: Complemental strand, 30827380 - 30827106
Alignment:
Q  11 taatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgtactgatgtcacagagaagggag 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30827380 taatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgtacggatgtcacagagaagggag 30827281  T
Q  111 cgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtgcaaaatcaaagttggaagaagttgaagtagttgtg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30827280 cgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtgcaaaatcaaagttggaagaagttgaagtagttgtg 30827181  T
Q  211 tcacaagctgctagtattaccaaatatctttataatcatttgttatgccttgtatttgatgagaaagcatacaggt 286  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30827180 tcacaagctgctagtattactaaatatctttataatca-ttgttatgccttgtatttgatgagaaagcatacaggt 30827106  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 29658792 - 29658867
Alignment:
Q  12 aatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 87  Q
    |||||||||||||| |||||||| |||||||| |||| ||||||||||| ||||| ||||||||||||||||||||    
T  29658792 aatacttgagagatcaaaacatcatattgtttgcttccattttccccaacttggaagtgcttgatttgagctattg 29658867  T

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Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 29691307 - 29691382
Alignment:
Q  12 aatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 87  Q
    |||||||||||||| |||||||  |||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  29691307 aatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattg 29691382  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 87
Target Start/End: Original strand, 29718819 - 29718894
Alignment:
Q  12 aatacttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 87  Q
    |||||||||||||| |||||||  |||||||| |||| ||||||||||| ||||||||||||||||||||||||||    
T  29718819 aatacttgagagatcaaaacattatattgtttgcttccattttccccaacttggaggtgcttgatttgagctattg 29718894  T

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Target: chr1; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 33160773 - 33160702
Alignment:
Q  15 acttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctatt 86  Q
    |||||||||||||||||||| |||||||| |||  || ||||||||||||||||||||||||||||||||||    
T  33160773 acttgagagatgaaaacatcgtattgtttcctttcatgttccccaatttggaggtgcttgatttgagctatt 33160702  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 29659026 - 29659108
Alignment:
Q  93 atgtcacagagaagggagcgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagatcttgtgatcaagtg 175  Q
    ||||||||||||| ||||  || ||||| |||||||| ||||| ||||| |  ||||||||| |||||| |||||||||||||    
T  29659026 atgtcacagagaatggagtaaaacatgtggttcaaaactgcacgcaactgactgagatcaatttgagatattgtgatcaagtg 29659108  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 19468340 - 19468397
Alignment:
Q  23 gatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttga 80  Q
    |||||||||||| || ||||| |||| ||||| ||||||||| || ||||||||||||    
T  19468340 gatgaaaacatcataatgtttgcttccatttttcccaatttgcagctgcttgatttga 19468397  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 9581332 - 9581276
Alignment:
Q  20 agagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgat 76  Q
    |||||| |||||||| || ||||| |||| ||||||||||||||| || ||||||||    
T  9581332 agagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9581276  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 9586900 - 9586844
Alignment:
Q  20 agagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgat 76  Q
    |||||| |||||||| || ||||| |||| ||||||||||||||| || ||||||||    
T  9586900 agagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9586844  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 29719053 - 29719121
Alignment:
Q  93 atgtcacagagaagggagcgaatcatgtcgttcaaaaatgcacacaactcaaggagatcaatatgagat 161  Q
    ||||||||||||| |||| ||| ||||| |||||||| ||||  ||||| | |||||||||| ||||||    
T  29719053 atgtcacagagaatggagtgaaacatgtggttcaaaactgcaagcaactgagggagatcaatttgagat 29719121  T

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Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 6594439 - 6594505
Alignment:
Q  15 acttgagagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgag 81  Q
    |||||| ||||||||||||| |||||||| ||||||||||||||| ||||||| |||||||||||||    
T  6594439 acttgaaagatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgag 6594505  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 10634273 - 10634341
Alignment:
Q  21 gagatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattgta 89  Q
    |||||||| ||||| | ||||||||||| ||||| ||||| ||||| ||||| |||||||| |||||||    
T  10634273 gagatgaacacatcatgttgtttacttccatttttcccaacttggacgtgctggatttgagttattgta 10634341  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 55908567 - 55908626
Alignment:
Q  24 atgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagct 83  Q
    ||||||||||| |||||||| |||| ||||||||||||||| |  | |||||||||||||    
T  55908567 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 55908626  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 87
Target Start/End: Complemental strand, 570606 - 570542
Alignment:
Q  23 gatgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagctattg 87  Q
    |||||||||||  || ||||| |||||||||||||||||||| || | |||||||| || |||||    
T  570606 gatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattg 570542  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 1037503 - 1037562
Alignment:
Q  24 atgaaaacatcctattgtttacttctattttccccaatttggaggtgcttgatttgagct 83  Q
    ||||||||||| |||||||| |||| ||||||||||||||| |  | |||||||||||||    
T  1037503 atgaaaacatcatattgtttgcttccattttccccaatttgcaatttcttgatttgagct 1037562  T

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