View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17381_low_7 (Length: 276)
Name: NF17381_low_7
Description: NF17381
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17381_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 3432595 - 3432338
Alignment:
| Q |
1 |
gcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3432595 |
gcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataa |
3432496 |
T |
|
| Q |
101 |
agataaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3432495 |
agataaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagtagt |
3432396 |
T |
|
| Q |
201 |
tgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtg |
258 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3432395 |
tgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtg |
3432338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 3426425 - 3426170
Alignment:
| Q |
1 |
gcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataa |
100 |
Q |
| |
|
|||| ||||||||||||||| | |||||||||||||| ||||||||||||| |||||||| || | |||| ||||||||||| || ||||||||| | |
|
|
| T |
3426425 |
gcaagaaggagaaggaagaaaaggaagaggttttagtgattgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgatga |
3426326 |
T |
|
| Q |
101 |
agat---aaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagt |
197 |
Q |
| |
|
|||| |||||| |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| || | || |||||| | ||||||| |
|
|
| T |
3426325 |
agatgataaggtgattaagccagttaatacggagtttgctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaatagt |
3426226 |
T |
|
| Q |
198 |
agttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatga |
253 |
Q |
| |
|
||| || ||||||||||||| ||| ||||||||||||||| ||| |||||||| |
|
|
| T |
3426225 |
tgtttaagggttggattaacggatttgttggaagatttgggagctgaggatgatga |
3426170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 11897869 - 11898124
Alignment:
| Q |
1 |
gcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataa |
100 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| ||||||||||||| |||||||| || | |||| ||||||||||| || ||||||||| | |
|
|
| T |
11897869 |
gcaaaacggagaaggaagaagaggaagaggttttagtgattgaagggattgagtttgataagagtttaggtgttaagtttgatgttttcattaatgatga |
11897968 |
T |
|
| Q |
101 |
aga---taaggtggttaagccatttaatacagagtttgctgggagctttgtgaatgtacctcattctttgcatgaacaaacaatgaagaatattaatagt |
197 |
Q |
| |
|
||| ||||| | |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||| || | || |||||| | |||||| |
|
|
| T |
11897969 |
agatgctaaggagattaagccagttaatacggagtttgctggaagctttgtgaatgtacctcattcttcccatgatcacaaaaagaagaagactaatagc |
11898068 |
T |
|
| Q |
198 |
agttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatga |
253 |
Q |
| |
|
||| || ||||||||||||| ||| || |||||||||||| ||| |||||||| |
|
|
| T |
11898069 |
tgtttaagggttggattaacggatttgttgaaagatttgggagctgaggatgatga |
11898124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 11912941 - 11913066
Alignment:
| Q |
1 |
gcaaaaaggagaaggaagaagaagaagaggttttagttattgaagggattgtgtttgatacgaaagcatgtgtaaagtttgatgtgtttattaatgataa |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||| ||||||||| |||||||||||| | ||||||||||||||||||||||||||||| | |
|
|
| T |
11912941 |
gcaaaaaggagaaggaagaagaggaagaggtttcagcgattaaagggattgagtttgatacgaacatacgtgtaaagtttgatgtgtttattaatgatga |
11913040 |
T |
|
| Q |
101 |
agataaggtggttaagccatttaatac |
127 |
Q |
| |
|
| ||||||||||||||||||||||||| |
|
|
| T |
11913041 |
a-ataaggtggttaagccatttaatac |
11913066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 179 - 258
Target Start/End: Original strand, 11913093 - 11913172
Alignment:
| Q |
179 |
aatgaagaatattaatagtagttgtagatttggattaacggacttgctggaagatttgggagttgatgatgatgacagtg |
258 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
11913093 |
aatgaagaatattaatagtagttgcagatttggattaacggacttgctggaagatttgggagctgacgatgatgacagtg |
11913172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University