View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_high_12 (Length: 275)
Name: NF17382_high_12
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 257
Target Start/End: Complemental strand, 42858914 - 42858668
Alignment:
| Q |
11 |
cagagaagcatggaatgatttatctgaagaataaaattctttctattttgctaaaggaaaatgatctacatattggtacacctattggagttccccctta |
110 |
Q |
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| T |
42858914 |
cagagaagcatggaatgatttatctgaagaataaaattctttctatattgctaaaggaaaatgatctacatattggtacacctattggagttccccctta |
42858815 |
T |
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| Q |
111 |
tgttaaaagaaggttggctcgtaaaaaggttcttcttgttctggatgatatcaatgatttagagcacttagagaatttagttggaggacttgattggttt |
210 |
Q |
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| T |
42858814 |
tgttaagagaaggttggctcgtaaaaaggttcttcttgttctggatgatatcaatgatttagagcacttagagaatttagttggaggacttgattggttt |
42858715 |
T |
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| Q |
211 |
ggatctggcagtagaatcatcgtaacaaccagagataagcaagtgct |
257 |
Q |
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| T |
42858714 |
ggatctggtagtagaatcatcgtaacaaccagagataagcaagtgct |
42858668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 254
Target Start/End: Complemental strand, 7081500 - 7081382
Alignment:
| Q |
136 |
aaggttcttcttgttctggatgatatcaatgatttagagcacttagagaatttagttggaggacttgattggtttggatctggcagtagaatcatcgtaa |
235 |
Q |
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| T |
7081500 |
aaggttcttgttgttcttgacgatgtcaaggatccacaacaattagaaattttaattggaacacttgattggtttggaacaggtagtagaatcattgtaa |
7081401 |
T |
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| Q |
236 |
caaccagagataagcaagt |
254 |
Q |
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| T |
7081400 |
caactaaagataagcaagt |
7081382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 7068945 - 7068822
Alignment:
| Q |
136 |
aaggttcttcttgttctggatgatatcaatgatttagagcacttagagaatttagttggaggacttgattggtttggatctggcagtagaatcatcgtaa |
235 |
Q |
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| T |
7068945 |
aaggttcttgttgttcttgacgatgtgagtgatcaagagcaactagatattttaattggaacacttgattggtttggaaaaggtagtagaatcatcataa |
7068846 |
T |
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| Q |
236 |
caaccagagataagcaagtgcttg |
259 |
Q |
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| T |
7068845 |
caaccgtagataagcaagtacttg |
7068822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 7838393 - 7838333
Alignment:
| Q |
187 |
ttagttggaggacttgattggtttggatctggcagtagaatcatcgtaacaaccagagata |
247 |
Q |
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| T |
7838393 |
ttagctggaggacatgattggtttggttctggtagcagaatcattgtaacaacaagagata |
7838333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 3963519 - 3963576
Alignment:
| Q |
201 |
tgattggtttggatctggcagtagaatcatcgtaacaaccagagataagcaagtgctt |
258 |
Q |
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||||| |||||||| ||| ||||||||||| ||||||| |||||||||||| ||||| |
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| T |
3963519 |
tgatttgtttggatttggtagtagaatcattataacaacaagagataagcaaatgctt |
3963576 |
T |
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