View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_high_13 (Length: 237)
Name: NF17382_high_13
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_high_13 |
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| [»] scaffold1903 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9981671 - 9981893
Alignment:
| Q |
1 |
cccaattcaaaaaaatctannnnnnnnncaaaattataatgggtagtttcagaaacaacaatnnnnnnnnnntacccaattcaacaaaatggannnnnnn |
100 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
9981671 |
cccaattcaaaaaaatctatttttttttcaaaattataatgcgtagtttcagaaacaacaataaaaaa----tacccaattcaacaaaatggattttttt |
9981766 |
T |
|
| Q |
101 |
nnattttaaattgaagttatgggtatgttcaaaaacaacaataacaagaacaa------acaatgggtggagtgagaataataaggtaaggatgaagaag |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9981767 |
tt-ttttaaattgaagttatgggtatgttcaaaaacaacaataacaagaacaagtacaaacaatgggtggagtgagaataataaggtaaggatgaagaag |
9981865 |
T |
|
| Q |
195 |
atgatttttgtagcatattagaaagaga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
9981866 |
atgatttttgtagcatattagaaagaga |
9981893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 104 - 222
Target Start/End: Complemental strand, 3614784 - 3614660
Alignment:
| Q |
104 |
ttttaaattgaagttatgggtatgttcaaaaacaacaataacaagaacaa------acaatgggtggagtgagaataataaggtaaggatgaagaagatg |
197 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3614784 |
ttttaaattgaagttatgggtatgttaaaaaacagcagtaacaagaacaagtacaaacaatgggtggagtgagaataataaggtaaggatgaagaagatg |
3614685 |
T |
|
| Q |
198 |
atttttgtagcatattagaaagaga |
222 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3614684 |
atttttgtagcatattagaaagaga |
3614660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 104 - 222
Target Start/End: Original strand, 35611763 - 35611887
Alignment:
| Q |
104 |
ttttaaattgaagttatgggtatgttcaaaaacaacaataacaagaacaa------acaatgggtggagtgagaataataaggtaaggatgaagaagatg |
197 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35611763 |
ttttaaattaaagttatgggtatgttcaaaaacagcaataacaagaacaagtacaaacaatgggtggagtgagaataataaggtaaggatgaagaagatg |
35611862 |
T |
|
| Q |
198 |
atttttgtagcatattagaaagaga |
222 |
Q |
| |
|
|||||| |||||||||||||||||| |
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| T |
35611863 |
atttttttagcatattagaaagaga |
35611887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 222
Target Start/End: Original strand, 5568924 - 5569117
Alignment:
| Q |
29 |
caaaattataatgggtagtttcagaaacaacaatnnnnnnnnnntacccaattcaacaaaatggannnnnnnnnattttaaattgaagttatgggtatgt |
128 |
Q |
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| T |
5568924 |
caaaattataatgggtagtttcagaaacaacaataaaaaaa---tacccaattcaacaaaatgggttttttttttttaaaaattgaagttatgggtatgt |
5569020 |
T |
|
| Q |
129 |
tcaaaaacaacaataacaagaacaa------acaatgggtggagtgagaataataaggtaaggatgaagaagatgatttttgtagcatattagaaagaga |
222 |
Q |
| |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5569021 |
tcaaaaacaacaataacaagaaaaactataaacaatgggtggagtgagaataataaggtaaggatgaagaa---gatttttgtagcatattagaaagaga |
5569117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 62
Target Start/End: Complemental strand, 3614855 - 3614822
Alignment:
| Q |
29 |
caaaattataatgggtagtttcagaaacaacaat |
62 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
3614855 |
caaaattataatgggtagtttcagaaacaacaat |
3614822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 35611695 - 35611728
Alignment:
| Q |
29 |
caaaattataatgggtagtttcagaaacaacaat |
62 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
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| T |
35611695 |
caaaattataatgggtagtttcaaaaacaacaat |
35611728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1903 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold1903
Description:
Target: scaffold1903; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 844 - 964
Alignment:
| Q |
108 |
aaattgaagttatgggtatgttcaaaaacaacaataacaagaacaa------acaatgggtggagtgagaataataaggtaaggatgaagaagatgattt |
201 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
844 |
aaattgaagttatgagtatgttcaaaaacagcaataacaagaacaagtacaaacaatgggtggagtgagaataataaggtatggatgaagaagatgattt |
943 |
T |
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| Q |
202 |
ttgtagcatattagaaagaga |
222 |
Q |
| |
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||||||||||||||||||||| |
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| T |
944 |
ttgtagcatattagaaagaga |
964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 15480811 - 15480933
Alignment:
| Q |
108 |
aaattgaagttatgggtatgttcaaaaacaacaataacaagaacaa--------acaatgggtggagtgagaataataaggtaaggatgaagaagatgat |
199 |
Q |
| |
|
|||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||| || ||| |
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|
| T |
15480811 |
aaattgaagttatgggtatgttcaaagacaataacaacaagaacaaggacatgaacaatgggtggagtgagaatgataaggtaaggatgaagaggaagat |
15480910 |
T |
|
| Q |
200 |
ttttgtagcatattagaaagaga |
222 |
Q |
| |
|
||||| |||||||||||||||| |
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| T |
15480911 |
gtttgttgcatattagaaagaga |
15480933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 33130025 - 33129907
Alignment:
| Q |
104 |
ttttaaattgaagttatgggtatgttcaaaaacaacaataacaagaacaa--------acaatgggtggagtgagaataataaggtaaggatgaagaaga |
195 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
33130025 |
ttttaaattgaagttatggatatgtttaaaaacagcaacaacaagaacaagggaaataacaatgggtggagtgagaataataaggtaaggatgaagagga |
33129926 |
T |
|
| Q |
196 |
tgatttttgtagcatattagaa |
217 |
Q |
| |
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|| ||||||||||||||||| |
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|
| T |
33129925 |
tg---tttgtagcatattagaa |
33129907 |
T |
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