View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_high_4 (Length: 422)
Name: NF17382_high_4
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 242 - 406
Target Start/End: Original strand, 26368184 - 26368347
Alignment:
| Q |
242 |
atgaagaagtaaaatatttcccgtgtcagacatttgtagtcaatataatgtgtgtcatacaaaattcagaaaagtgagttttataagaatgcaaagaaac |
341 |
Q |
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| T |
26368184 |
atgaagaagtaaaaaatttcccgtgtcagacatttgtagtcaatataatgtgtgtcatacaaaattcagaaaagtaagtttcataagaatgcaaagaaac |
26368283 |
T |
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| Q |
342 |
gattgagtaaccaaaaccaccatgggcatgtactcatatatgaagtgat-gacaaagggtaattgg |
406 |
Q |
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| T |
26368284 |
gattgagtaaccaaaaccaccatgggcatgtactc--atatgaagtgatggacaaagggtaattgg |
26368347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26367851 - 26367883
Alignment:
| Q |
1 |
atccataaccactcatcgcctgctactcacccg |
33 |
Q |
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| T |
26367851 |
atccataacaactcatcgcctgctactcacccg |
26367883 |
T |
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