View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_high_5 (Length: 402)
Name: NF17382_high_5
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 114 - 384
Target Start/End: Complemental strand, 10506775 - 10506506
Alignment:
| Q |
114 |
gaggtcaaacaagtcaccaatgaaatgcatcctaacaaatcaccgtggtagattgtatgacannnnnnncataattttttggactcatgttgtggctatg |
213 |
Q |
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| T |
10506775 |
gaggtcaaacaagttaccaatcaaatgcatcctaacaaatcaccgtggtagattgtatgacatttttttcataattttttggactcatgttgtggctatg |
10506676 |
T |
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| Q |
214 |
acgtgtttggctagagcatgacatcctttagtgatacaaacacagtgctgctagtgctacctagggtgagaatcaataaacgatgaagaacatgtcaccg |
313 |
Q |
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| T |
10506675 |
acgtgtttggctagagcatgacatcctttagtgatacaaacacagtgctgctagtgctacccagggtgagaatcaacaaacgatgaagaacatgtcacct |
10506576 |
T |
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| Q |
314 |
atatttctgtgtgcaagagaaatgctaggagcgtcaaatctatgtaactcaccactttatgtgtgaatcat |
384 |
Q |
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| T |
10506575 |
gtatttctgtgtgcaagagaaatgctaggagcgt-aaatctatgtaactcaccactttatgtgtgaatcat |
10506506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 10507122 - 10507071
Alignment:
| Q |
10 |
attattcttttgtttagtgaggttcagtttatcgtggatgctacggacttta |
61 |
Q |
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| T |
10507122 |
attattcttttgtttagtgaggtttagtttatcgtggattccacggacttta |
10507071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 10501788 - 10501740
Alignment:
| Q |
189 |
tttttggactcatgttgtggctatgacgtgtttggctagagcatgacat |
237 |
Q |
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| T |
10501788 |
tttttggacacatgttatggccatgacgtgtttggctagagcatgacat |
10501740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 151
Target Start/End: Complemental strand, 10501863 - 10501807
Alignment:
| Q |
95 |
ttaatcaccttttgtcaaagaggtcaaacaagtcaccaatgaaatgcatcctaacaa |
151 |
Q |
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| T |
10501863 |
ttaatcacctttggttgaaaaggtcaaacaagtcatcaatcaaatgcatcccaacaa |
10501807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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