View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17382_high_8 (Length: 327)
Name: NF17382_high_8
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 12327752 - 12327459
Alignment:
| Q |
20 |
taatgttaaaatttattaaatatagataagaaaaaa-ggaagcaatgaaacttagcctagccctttatttttctaactcctagaaaaaccaatcccaacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12327752 |
taatgttaaaatttattaaatatagataagaaaaaaaggaagcaatgaaacttagcctagccctttatttttctaactcctagaaaaaccaatcccaacc |
12327653 |
T |
|
| Q |
119 |
tagccatctacacaactgatcgggaatagccttacgctttaaaagattttgacgcgtagggaccccgtcaagtagtaactgcactttcgaggaggcccat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
12327652 |
tagccatctacacaactgatcgggaatagccttatgctttaaaagattttgacgcgtagggaccccgtcaagtagtaactgcactttcgagggggcccat |
12327553 |
T |
|
| Q |
219 |
ctacgcctaaccaatttcaaggatttcaaaacatcgaccaatccagcctcccagggccgcataggccaaatggacagaatacttcctgtctgtg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12327552 |
ctacgcctaaccaatttcaaggatttcaaaacatcgaccaatccagcctcccagggccgcataggccaaatggacagaatacttcctgtctgtg |
12327459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University