View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_low_10 (Length: 312)
Name: NF17382_low_10
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 105 - 296
Target Start/End: Original strand, 10627891 - 10628081
Alignment:
| Q |
105 |
ataaaagttgactttttctcacaatatgtattgtatcgtctttgttacggattactacaaatattatgcgcccaccacttccatcaattatccggatcaa |
204 |
Q |
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| T |
10627891 |
ataaaagttgaccttttctcacaatatgtattgtcttgtctttgttacggattactacaaatattatgcgcccaccacttccat-aattatccggatcaa |
10627989 |
T |
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| Q |
205 |
actagtttgcagacacgacatcctttgaaaacattgtagcatgaattcaacaaagccacaccatcataatactaactaacgtgtatcatata |
296 |
Q |
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| T |
10627990 |
actagtttgtagacacgacatcctttgaaaacattgtagcatgaattcaacaaagccacaccatcataatactaactaacgtgtatcatata |
10628081 |
T |
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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 29757849 - 29757786
Alignment:
| Q |
200 |
atcaaactagtttgcagacacgacatcctttgaaaacattgtagcatgaattcaacaaagccac |
263 |
Q |
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| T |
29757849 |
atcaaactagtttgcagacacgacatcctttgaaaacaatgtagcgtgaattcaacaaagccac |
29757786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 29757971 - 29757894
Alignment:
| Q |
117 |
tttttctcacaatatgtattgtatcgtctttgttacggattactacaaa-tattatgcgcccaccacttccatcaatt |
193 |
Q |
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| T |
29757971 |
tttttttcacaatatgtattgtttttactttgttacatgttactacaaaatattctgcacccaccacttccatcaatt |
29757894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 25333982 - 25333899
Alignment:
| Q |
200 |
atcaaactagtttgcagacacgacatcctttgaaaacattgtagcatgaattcaacaaagccacaccatcataatactaactaa |
283 |
Q |
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| T |
25333982 |
atcaaactagtttgcaaacacgacatcctttaaaaacaatgtagcgtgaattcaacaaagccacaccatcaaggtactaactaa |
25333899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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