View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_low_11 (Length: 305)
Name: NF17382_low_11
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 42858891 - 42859185
Alignment:
| Q |
1 |
gataaatcattccatgcttctctgattcttctgttatgtttgccataaagcaacttccttcatattcaaaacaaagacggttatacactgcagctgcgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42858891 |
gataaatcattccatgcttctctgattcttctgttatgtttgccataaagcaacttccttcatattcaaaacaaagacggttatacactgcagctgcgag |
42858990 |
T |
|
| Q |
101 |
agttgtcttcccaataccgcccataccccaaatgccaatgacaagaacatctgcagttgaatctaagcataacaatgactccaaatctgcaatcctttct |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42858991 |
agttgtcttcccaataccgcccatgccccaaatgccaatgacaagaacatctgcagttgaatctaagcataacaatgactccaaatctgcaatcctttct |
42859090 |
T |
|
| Q |
201 |
tcaattccaacaagatctgttaactcactttggtacatcagattcaacttggatgacaaacatttgacaatttcttctataagctcaacttcatc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42859091 |
tcaattccaacaagatctgttaactcactttggtacatcagattcaacttggatgacaaacatttgacaatttcttctataagctcaacttcatc |
42859185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 3801731 - 3801769
Alignment:
| Q |
101 |
agttgtcttcccaataccgcccataccccaaatgccaat |
139 |
Q |
| |
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| T |
3801731 |
agttgtcttgccaataccgcccataccccaaattccaat |
3801769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Complemental strand, 3954403 - 3954361
Alignment:
| Q |
101 |
agttgtcttcccaataccgcccataccccaaatgccaatgaca |
143 |
Q |
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| T |
3954403 |
agttgtcttgccaatacctcccataccccaaattccaatgaca |
3954361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 4002444 - 4002486
Alignment:
| Q |
101 |
agttgtcttcccaataccgcccataccccaaatgccaatgaca |
143 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| ||||||||| |
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| T |
4002444 |
agttgtcttgccaatacctcccataccccaaattccaatgaca |
4002486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 4218788 - 4218826
Alignment:
| Q |
101 |
agttgtcttcccaataccgcccataccccaaatgccaat |
139 |
Q |
| |
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||||||||| ||||||||||||||||||||||| ||||| |
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|
| T |
4218788 |
agttgtcttgccaataccgcccataccccaaattccaat |
4218826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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