View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_low_12 (Length: 301)
Name: NF17382_low_12
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 38225036 - 38224755
Alignment:
| Q |
1 |
ggagcataaacttatataactaaatgtacctaataagtcatgtgtgacataacttcacattaaaaaatagatcaattatggcaaggaaaatgactgaata |
100 |
Q |
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| T |
38225036 |
ggagcataaagttatataactaaatgcacctaataagtcatgtgtgacataacttcacattaaaaaatagatcaattatggcaaagaaaatgactgatta |
38224937 |
T |
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| Q |
101 |
agatgataaattatactaatagcaattgaaaaataatggatgctgaacacctcagaaattgtgtcagatcccactttcggtttagtggtgggtcctccct |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38224936 |
agatgataaattatactaatcgcaattgaaaaataatggatgctgaacacctcagaaattgtgtcagatcccactttcggtttagtggtgggtcctccct |
38224837 |
T |
|
| Q |
201 |
caaatttatacacacgtatataactataaatagaattttgctagccagaacaaattcatacttcagaggtgtaacaatttac |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
38224836 |
caaatttatacacacgtatataactataaatagaattttgctagccagaacaaattcatacttcagaggtggaacaatttac |
38224755 |
T |
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