View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_low_16 (Length: 229)
Name: NF17382_low_16
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_low_16 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 43224583 - 43224355
Alignment:
| Q |
1 |
taatttaccaaaaaatattccaacagtactactgctacctagtattgtcccactggatggataacatctagcgatttgtgagtatttgttgttccaaaat |
100 |
Q |
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| T |
43224583 |
taatttaccaaaaaatattccaacagtactactgctacctagtattgtcccactggatgtataacatctagcgatttgtgagtatttgttgttccaaaat |
43224484 |
T |
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| Q |
101 |
ttagtttagcttctttttcattcctccaacactttgaatgcattcatggatttcttcaaatgtgttaagttgttcatcatcatgttcatttcctttttat |
200 |
Q |
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| T |
43224483 |
ttagtttagcttctttttcattcctccaacactttgaaagcattcatggatttcttcaaatgtgttaagttgttcatcatcatgttcatttcctttttat |
43224384 |
T |
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| Q |
201 |
ctgctacaccaatcttctcagattcttcc |
229 |
Q |
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| T |
43224383 |
ctgctacaccaatcttctcagattcttcc |
43224355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 41654414 - 41654543
Alignment:
| Q |
100 |
tttagtttagcttctttttcattcctccaacactttgaatgcattcatggatttcttcaaatgtgttaagttgttcatcatcatgttcatttccttttta |
199 |
Q |
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| T |
41654414 |
tttagtttagcttctttttcatttctccaacactttgaaagaattcatggatttcttcaaatgtgtcaagttgttcatcgtcattttcatttccttttta |
41654513 |
T |
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| Q |
200 |
tctgctacaccaatcttctcagattcttcc |
229 |
Q |
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| T |
41654514 |
tctgctacaccaatcttctcagactcttcc |
41654543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 127 - 225
Target Start/End: Complemental strand, 43228277 - 43228175
Alignment:
| Q |
127 |
caacactttgaatgcat----tcatggatttcttcaaatgtgttaagttgttcatcatcatgttcatttcctttttatctgctacaccaatcttctcaga |
222 |
Q |
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| T |
43228277 |
caacactttgaatgcatgtattcatggatttcttcaaatgtttcaacatgttcatcatcattttcattttctttttatctgcaacatcaatcttctcaga |
43228178 |
T |
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| Q |
223 |
ttc |
225 |
Q |
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||| |
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| T |
43228177 |
ttc |
43228175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 41649903 - 41649987
Alignment:
| Q |
141 |
cattcatggatttcttcaaatgtgttaagttgttcatcatcatgttcatttcctttttatctgctacaccaatcttctcagattc |
225 |
Q |
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| T |
41649903 |
cattcatggatttcttcaaatatttcaacatgttcatcatcattttcattttcttttcatctgcaacaccaatcttctcagattc |
41649987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 43213720 - 43213636
Alignment:
| Q |
141 |
cattcatggatttcttcaaatgtgttaagttgttcatcatcatgttcatttcctttttatctgctacaccaatcttctcagattc |
225 |
Q |
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| T |
43213720 |
cattcatggctttcttcaaatgtgtcaacatgttgatcatcattttcattttctttttatgtgcaacacctattttctcagattc |
43213636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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