View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_low_17 (Length: 212)
Name: NF17382_low_17
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_low_17 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 29055288 - 29055109
Alignment:
| Q |
16 |
cagatatttaactcaatgagtagggaacatcgtgttgaacctgatgctaaacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacg |
115 |
Q |
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| T |
29055288 |
cagatatttaactcaatgagtagggaacatcgtgtagaacctgatgctaaacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacg |
29055189 |
T |
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| Q |
116 |
aggcatgagtttatacagagaatgcctatgggaccaccaactgctattgattggaaagcactccttggtggttgtagggt |
195 |
Q |
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| T |
29055188 |
aggcatgagtttatacagagaatgcctatgggaccaccaactgctattgattggaaagcactccttggtggttgtagggt |
29055109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 34636434 - 34636254
Alignment:
| Q |
16 |
cagatatttaactcaatgagtagggaacatcgtgttgaacctgatgctaaacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacg |
115 |
Q |
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| T |
34636434 |
cagatattcaattcaatgagtaaggatcatcttgttgaacctaatgctatacattattcatgtgtggtcgatatctatagccgtgctggtcgcctcaatg |
34636335 |
T |
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| Q |
116 |
aggc--atgagtttatacagagaatgcctatgggaccaccaactgctattgattggaaagcactccttggtggttgtagggttt |
197 |
Q |
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| T |
34636334 |
aagcatatgagtttatacaaagaatgcctatggg---accaactgctggtgcttggaaatcactccttgctggttgtagggttt |
34636254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 13793023 - 13792843
Alignment:
| Q |
16 |
cagatatttaactcaatgagtagggaacatcgtgttgaacctgatgctaaacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacg |
115 |
Q |
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| T |
13793023 |
cagatattcaattcaatgagtagggatcatcttgttgaacctgaagctgagcactatacatgtgtggtcgatatctatagccgtgctggttgcctcgaag |
13792924 |
T |
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| Q |
116 |
aggc--atgagtttatacagagaatgcctatgggaccaccaactgctattgattggaaagcactccttggtggttgtagggttt |
197 |
Q |
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| T |
13792923 |
aagcatatgggtttatacagagaatgcctatgg---aaccaactgctattgcttggaaagcattccttgctggttgtagggttt |
13792843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 28743219 - 28743399
Alignment:
| Q |
16 |
cagatatttaactcaatgagtagggaacatcgtgttgaacctgatgctaaacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacg |
115 |
Q |
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| T |
28743219 |
cagatattcaattcaatgggtagggatcatcttgtagaacctgatgctaatcactattcatgcgtcgttgatatctatagccgtgctggtcgcctcaacg |
28743318 |
T |
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| Q |
116 |
aggcat--gagtttatacagagaatgcctatgggaccaccaactgctattgattggaaagcactccttggtggttgtagggttt |
197 |
Q |
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| T |
28743319 |
aggcatacaagtttatacagggcatgcctatgg---aaccaactgccagtgcttggggagcactccttgctgcttgtagggttt |
28743399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 29 - 197
Target Start/End: Original strand, 3492 - 3660
Alignment:
| Q |
29 |
caatgagtagggaacatcgtgttgaacctga-tgctaaacactattcatgtgtggtcgatatctataaccgtgttggtcgcctcgacgaggc--atgagt |
125 |
Q |
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| T |
3492 |
caatgagtaaggatcatcttgttgaacctaaatgctatacattattcatgtgtggtcgatatctatagccgtgctggtcgcctcaatgaagcatatgagt |
3591 |
T |
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| Q |
126 |
ttatacagagaatgcctatgggaccaccaactgctattgattggaaagcactccttggtggttgtagggttt |
197 |
Q |
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||||||| |||||||||||||| |||||||||| || ||||||| ||||||||| |||||||||||||| |
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| T |
3592 |
ttatacaaagaatgcctatggg---accaactgctggtgcttggaaatcactccttgctggttgtagggttt |
3660 |
T |
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