View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_low_2 (Length: 444)
Name: NF17382_low_2
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Complemental strand, 18982474 - 18982058
Alignment:
| Q |
10 |
attattctcagaatttaagtatttcttcaagaatattatcataaagtgaaatattgcatttgtgattgaacaaaattaaggtttttcttcaaccgtggag |
109 |
Q |
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| T |
18982474 |
attattctcagaatttaagtatttcttcaagtatattatcataaagtgaaatattgcatttgtgattgaacaaaattaaggtttttcttcaaccgtggag |
18982375 |
T |
|
| Q |
110 |
tacatgtggttccattaagatcattggatcatctaccaaatgattcttgaagaaattatatgcttgtggaatcaagagaattgaggctcttgatgaaagt |
209 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18982374 |
tacatga--ttccattaagatcattggatcatctaccaaatgattcttgaagaaatcatatgcttgtggaatcaagagaattgaggctcttgatgaaagt |
18982277 |
T |
|
| Q |
210 |
atatgcttggttcaactaagtagctacgtgtctctctggattatataattcgaacatacaaaaaatatcatttagccatgtcaggattttgtaacccgga |
309 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18982276 |
atatgcttggttcaactaagtagctacgtgactctctggattatataattcgaacatacaaaaaatatcatttagccatgtcaggattttgtaacccgga |
18982177 |
T |
|
| Q |
310 |
cattggcgagaaaagtagctaccaagggaagaggcagcggtccaattccggtaccaaagctaaagaaga-gggagcacaatacaaactccaaaacaagct |
408 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18982176 |
cattggcgagaaaagtagctaccaagggaagaggcagtggtccaattccggtaccaaagctaaagaagaggggagcacaatacaaactccaaaacaagct |
18982077 |
T |
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| Q |
409 |
actaaagtggtatagataa |
427 |
Q |
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||| ||||||||||||||| |
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| T |
18982076 |
acttaagtggtatagataa |
18982058 |
T |
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