View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_low_6 (Length: 368)
Name: NF17382_low_6
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 25527396 - 25527730
Alignment:
| Q |
16 |
atgtcactggcgtcctcaatacgaccagcattgatcatacatttggtgataatctgataggtaaccagtgagggtttgatagatgcatcagccttcattt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527396 |
atgtcactggcgtcctcaatacgaccagcattgatcatacatttggtgataatctgataggtaaccagtgagggtttgatagatgcatcagccttcattt |
25527495 |
T |
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| Q |
116 |
tccgaaaaacatcgagggccgcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25527496 |
tccgaaaaacatcgagggccgcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagtt |
25527595 |
T |
|
| Q |
216 |
aaagaagaactcgtgcaaatcaagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgtt |
315 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25527596 |
aaagaagaactcgtacaaatcaagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgattcgtt |
25527695 |
T |
|
| Q |
316 |
gctgagaacgccgactggcgggccatggcagaggc |
350 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
25527696 |
gctgagaacgccgactggcgggccatggcagaggc |
25527730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 25515016 - 25514682
Alignment:
| Q |
16 |
atgtcactggcgtcctcaatacgaccagcattgatcatacatttggtgataatctgataggtaaccagtgagggtttgatagatgcatcagccttcattt |
115 |
Q |
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||||||| ||| || ||||||||||||||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
25515016 |
atgtcacgggcatcttcaatacgaccagcactgatcaaagctttggtgataatctgataggtaaccggtgagggtttgatagatgcatcggccttcattt |
25514917 |
T |
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| Q |
116 |
tccgaaaaacatcgagggccgcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagtt |
215 |
Q |
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|||||||||||||||| ||||| ||||||| ||||||||||||||| || ||||| | |||||||| |||||||||||||||| |||||||||| |||| |
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| T |
25514916 |
tccgaaaaacatcgagagccgcgtcaatgcggccctcatcacaataggcattgataacaaagttatgagagacaatgttaggaacaattttaaacaagtt |
25514817 |
T |
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| Q |
216 |
aaagaagaactcgtgcaaatcaagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgtt |
315 |
Q |
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|||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514816 |
aaagaagaactcgtacaaatcaagagcttggttgtgtctttttgcgtggagcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgtt |
25514717 |
T |
|
| Q |
316 |
gctgagaacgccgactggcgggccatggcagaggc |
350 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
25514716 |
gctgagaacgccgactggcgggccatggcagaggc |
25514682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 25535425 - 25535759
Alignment:
| Q |
16 |
atgtcactggcgtcctcaatacgaccagcattgatcatacatttggtgataatctgataggtaaccagtgagggtttgatagatgcatcagccttcattt |
115 |
Q |
| |
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||||||| ||| |||||||||||||||||| |||||| ||||||||||||||| | || ||||| |||||||||||||||||||||| |||||||||| |
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| T |
25535425 |
atgtcacgggcatcctcaatacgaccagcactgatcaaacatttggtgataatgcggtaagtaacgggtgagggtttgatagatgcatcggccttcattt |
25535524 |
T |
|
| Q |
116 |
tccgaaaaacatcgagggccgcatcaatgcagccctcatcacaatatgcgttgatcataaagttataagagacaatgttaggagtaattttaaacgagtt |
215 |
Q |
| |
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|||||||||||||||| ||||| ||||||| ||||||||||||||| || ||||| | |||||||||||||||||||||||||| ||||||||| ||| |
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| T |
25535525 |
tccgaaaaacatcgagagccgcgtcaatgcggccctcatcacaataagcattgataacaaagttataagagacaatgttaggagcaattttaaagaggtt |
25535624 |
T |
|
| Q |
216 |
aaagaagaactcgtgcaaatcaagagcttcgttgtgtctttttgcgcggtgcatggcaccgatgatggcgttgcaggtgaacaccgtcggacgagtcgtt |
315 |
Q |
| |
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|||||||||||||| ||||||||||||||| |||| |||||| || |||||||| ||| | ||||| || |||||||||||||| || |||||||| ||| |
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| T |
25535625 |
aaagaagaactcgtacaaatcaagagcttcattgtatcttttcgcacggtgcattgcagcaatgatagcattgcaggtgaacacagttggacgagttgtt |
25535724 |
T |
|
| Q |
316 |
gctgagaacgccgactggcgggccatggcagaggc |
350 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |
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| T |
25535725 |
gctgagaacgtcgactggcgggccatggcagaggc |
25535759 |
T |
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