View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17382_low_7 (Length: 342)
Name: NF17382_low_7
Description: NF17382
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17382_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 37844781 - 37844452
Alignment:
| Q |
1 |
tttgggttgataatacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgcca |
100 |
Q |
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| T |
37844781 |
tttgggttgataatacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgcca |
37844682 |
T |
|
| Q |
101 |
gagggaaggaaaatcaaacaaggccaaacataggttacttttggaacattcagagcagctaccttcacaagcttttcagctattatcttaccatttccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37844681 |
gagggaaggaaaatcaaacaaggccaaacataggttacttttggaacattcagagcagctaccttcacaagcttttcagctattatcttaccatttccca |
37844582 |
T |
|
| Q |
201 |
tcagtttaactaaaagtccatcaatacaaattgttggtttgagattccaatcatcttcaacaccgaatccagatagaaattgatcaacgtcatgccaaaa |
300 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37844581 |
tcagtttaactaaaagcccatcaatacaaattgttggtttgagattccaatcatcttcaacaccgaatccagatagaaattgatcaatgtcatgccaaaa |
37844482 |
T |
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| Q |
301 |
gctagagtcactataataatccacaggttc |
330 |
Q |
| |
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||||||||||||||||||||||| |||||| |
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| T |
37844481 |
gctagagtcactataataatccataggttc |
37844452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 35025610 - 35025487
Alignment:
| Q |
14 |
tacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaa |
113 |
Q |
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| T |
35025610 |
tacaaggatttctgcaggtacctatattgaccccaacgtgttaggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggaaggaaga |
35025511 |
T |
|
| Q |
114 |
tcaaacaaggccaaacataggtta |
137 |
Q |
| |
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|||||| ||||||| ||||||||| |
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| T |
35025510 |
tcaaactaggccaagcataggtta |
35025487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 148
Target Start/End: Complemental strand, 37851957 - 37851838
Alignment:
| Q |
29 |
aggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaa |
128 |
Q |
| |
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|||||| ||||||| |||||| |||| || |||||||| |||||||||||||||| || ||||||| | ||||||| |||| ||||||| || |||| |
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| T |
37851957 |
aggtgcctatattgaccccaatgtgataggaaaaaccagttgaaaggtttggtaagtattggaccagtgatagagggacggaagatcaaactagaccaag |
37851858 |
T |
|
| Q |
129 |
cataggttacttttggaaca |
148 |
Q |
| |
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||||||||| |||||||||| |
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| T |
37851857 |
cataggttatttttggaaca |
37851838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 37838645 - 37838511
Alignment:
| Q |
12 |
aatacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaa |
111 |
Q |
| |
|
|||||||||||| || ||||| ||||||| ||||||||||| || ||||||||||||||||||||||||| || |||||| | ||||||| |||| |
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|
| T |
37838645 |
aatacaaggatttctgcaggtgtctatattgaccccaacgtgataggaaaaaccaattgaaaggtttggtaagtattggaccggtgatagagggacggaa |
37838546 |
T |
|
| Q |
112 |
aatcaaacaaggccaaacataggttacttttggaa |
146 |
Q |
| |
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|||||| |||||| ||||||||| |||||||| |
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| T |
37838545 |
gatcaaaattggccaagcataggttatttttggaa |
37838511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 163
Target Start/End: Complemental strand, 37846339 - 37846181
Alignment:
| Q |
5 |
ggttgataatacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagg |
104 |
Q |
| |
|
||||||||||||||||||| | ||| ||||||||| ||||| ||||||| ||||||||||||||| ||| |||| | ||| ||| | ||||| |
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| T |
37846339 |
ggttgataatacaaggatttcttttggtacatatattgaccccactgtgagaggaaaaaccaattgaaaagttgtgtaagtgttggcccagtgatagagg |
37846240 |
T |
|
| Q |
105 |
gaaggaaaatcaaacaaggccaaacataggttacttttggaacattcagagcagctacc |
163 |
Q |
| |
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||||| |||||||||||||| |||||||| |||||||||| | |||||||||||| |
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| T |
37846239 |
gaaggtaaatcaaacaaggctgggaataggttatttttggaacaattagagcagctacc |
37846181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 36 - 163
Target Start/End: Complemental strand, 37833098 - 37832971
Alignment:
| Q |
36 |
tatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaatcaaacaaggccaaacataggt |
135 |
Q |
| |
|
||||||| |||||||| || || |||||||| |||||||||||||||| || ||||||| | |||||||| ||| ||||| | ||||| |||| || |
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| T |
37833098 |
tatattgaccccaacgcgataggaaaaaccagttgaaaggtttggtaagtattggaccattgatagagggaatgaaggtcaaatgacgccaagcataagt |
37832999 |
T |
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| Q |
136 |
tacttttggaacattcagagcagctacc |
163 |
Q |
| |
|
|| |||||||| | | |||||||||||| |
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| T |
37832998 |
tatttttggaagaattagagcagctacc |
37832971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 36867324 - 36867190
Alignment:
| Q |
14 |
tacaaggattgttgaaggtgcatatattggccccaacgtgagagaaaaaaccaattgaaaggtttggtaactactggaccaacgccagagggaaggaaaa |
113 |
Q |
| |
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|||||||||| || |||| | ||||||| ||||||||||| || |||||||| |||||||||||| ||| || | || | | |||||||||||| | |
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| T |
36867324 |
tacaaggatttctgcaggtacctatattgaccccaacgtgataggaaaaaccagttgaaaggtttgataagtattaaactagtgatagagggaaggaaga |
36867225 |
T |
|
| Q |
114 |
tcaaacaaggccaaacataggttacttttggaaca |
148 |
Q |
| |
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|||||| ||||||||||||| ||| |||||||||| |
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| T |
36867224 |
tcaaactaggccaaacatagtttatttttggaaca |
36867190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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