View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17383_high_14 (Length: 219)
Name: NF17383_high_14
Description: NF17383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17383_high_14 |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 34707597 - 34707547
Alignment:
| Q |
154 |
ggaagaatgggtaaggagaatgtagatgggttggtgtatcggttaaagaga |
204 |
Q |
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| T |
34707597 |
ggaagaatgggtaaggagaatgtagatgggttggtttatcggttaaagaga |
34707547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 34707740 - 34707684
Alignment:
| Q |
5 |
atcatttaacaaaatcatttaacgtcagagattaaagtgatgattgtaacaccccaa |
61 |
Q |
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| T |
34707740 |
atcatttaacaaaattatttaacgtcagagactaaagtgataactgtaacaccccaa |
34707684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33060953 - 33060909
Alignment:
| Q |
1 |
catcatcatttaacaaaatcatttaacgtcagagattaaagtgat |
45 |
Q |
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| T |
33060953 |
catcatcatttaacagaattatttaacgtcagagactaaagtgat |
33060909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 25590573 - 25590529
Alignment:
| Q |
1 |
catcatcatttaacaaaatcatttaacgtcagagattaaagtgat |
45 |
Q |
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| T |
25590573 |
catcatcacttaacaaaattttttaacgtcagagattaaagtgat |
25590529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 79216 - 79172
Alignment:
| Q |
1 |
catcatcatttaacaaaatcatttaacgtcagagattaaagtgat |
45 |
Q |
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|||||||| |||||||||| ||||||||||| ||| ||||||||| |
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| T |
79216 |
catcatcacttaacaaaattatttaacgtcaaagactaaagtgat |
79172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5965422 - 5965466
Alignment:
| Q |
1 |
catcatcatttaacaaaatcatttaacgtcagagattaaagtgat |
45 |
Q |
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|||||| | |||||| ||||||||||||||||||| ||||||||| |
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| T |
5965422 |
catcattacttaacataatcatttaacgtcagagactaaagtgat |
5965466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 28524901 - 28524857
Alignment:
| Q |
1 |
catcatcatttaacaaaatcatttaacgtcagagattaaagtgat |
45 |
Q |
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|||||||| |||||||||| ||||||||||||||| |||| |||| |
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| T |
28524901 |
catcatcagttaacaaaattatttaacgtcagagactaaaatgat |
28524857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 39869063 - 39869019
Alignment:
| Q |
1 |
catcatcatttaacaaaatcatttaacgtcagagattaaagtgat |
45 |
Q |
| |
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|||||||| |||||| ||| ||||||||||||||| ||||||||| |
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| T |
39869063 |
catcatcacttaacataattatttaacgtcagagactaaagtgat |
39869019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1407783 - 1407739
Alignment:
| Q |
1 |
catcatcatttaacaaaatcatttaacgtcagagattaaagtgat |
45 |
Q |
| |
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|||||||| |||||||||| |||||||||||| || ||||||||| |
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| T |
1407783 |
catcatcagttaacaaaattatttaacgtcagggactaaagtgat |
1407739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 6612558 - 6612518
Alignment:
| Q |
5 |
atcatttaacaaaatcatttaacgtcagagattaaagtgat |
45 |
Q |
| |
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|||| |||||||||| |||||||||||| |||||||||||| |
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| T |
6612558 |
atcacttaacaaaattatttaacgtcagggattaaagtgat |
6612518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33342559 - 33342515
Alignment:
| Q |
1 |
catcatcatttaacaaaatcatttaacgtcagagattaaagtgat |
45 |
Q |
| |
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|||||||| |||||| ||| ||||||||||||||| ||||||||| |
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| T |
33342559 |
catcatcacttaacataattatttaacgtcagagactaaagtgat |
33342515 |
T |
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