View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17383_high_3 (Length: 429)
Name: NF17383_high_3
Description: NF17383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17383_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 395
Target Start/End: Complemental strand, 30654397 - 30654023
Alignment:
| Q |
13 |
atacttggctggggttgcggcaaggcaatcccttgttccattatctcttcattttatgtgcagaaggcttatatgcgctcatcaaacaagctgaaagaag |
112 |
Q |
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| T |
30654397 |
atacttggctggggtggcggcaaggcaatcccttgttccattatctcttcattttatgtgcagaaggcttatatgcgctcatcagacaagctgaaagaag |
30654298 |
T |
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| Q |
113 |
aggagacttgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttcctttttctcatggcagaagatcga |
212 |
Q |
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| T |
30654297 |
gggagacttgcatgacatacgaatatgcactgatgcgcctgttatatctcacctattatttgcaaatgattgtttcctttttctcagggcggaagatcga |
30654198 |
T |
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| Q |
213 |
gaagctcaagtgatgaaaaatatattagccacatatgaagctacttttgcgcaggctattagcttacccaagttttgaagtgtactatagcaatcatgtg |
312 |
Q |
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| T |
30654197 |
gaagctcaagtgatgaaaaatatattagccacatatgaagctacttttgcgtaggctattagcttacccaag-tttgaag-------tagcaatcgtgtg |
30654106 |
T |
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| Q |
313 |
gaagcatcgcaaagagactccataaccaatactttaggtgcccgtgctgttatgggaacagaaaaatatcttggtctgccttc |
395 |
Q |
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| T |
30654105 |
gaagcatcgcaaagagactccataaccaatactttaggtgtccgtactgttatgggaacaggaaaatatcttggtctcccttc |
30654023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 395
Target Start/End: Complemental strand, 14859231 - 14859056
Alignment:
| Q |
218 |
tcaagtgatgaaaaatatattagccacatatgaagctacttttgcgcaggctattagcttacccaagttttgaagtgtactatagcaatcatgtggaagc |
317 |
Q |
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| T |
14859231 |
tcaagtgatgaataatattttaggaacctatgaagttacttttgggtaggctattagcttacccaagtcca-aagtgtactataacaaccgtgtggaaac |
14859133 |
T |
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| Q |
318 |
atcgcaaagagactccataaccaatactttaggtgcccgtgctgttatgggaacagaaaaatatcttggtctgccttc |
395 |
Q |
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| | | |||||| ||||| ||||||||| |||||| | ||||||| |||| ||| ||||||||||||||| ||||| |
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| T |
14859132 |
aacactaagagaatccatcaccaatactctaggtg-tcatgctgttttggggacaagaaaatatcttggtcttccttc |
14859056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 12716813 - 12716746
Alignment:
| Q |
121 |
tgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttc |
188 |
Q |
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| T |
12716813 |
tgcatgacatatctatatgtactaatgctcccgttatttctcaccttttatttgcagatgattgtttc |
12716746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 188
Target Start/End: Complemental strand, 12778044 - 12777977
Alignment:
| Q |
121 |
tgcatgacatacgaatatgtactgatgcgcctgttatatctcacctattatttgcaaatgattgtttc |
188 |
Q |
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| T |
12778044 |
tgcatgacatatctatatgtactaatgctcccgttatttctcaccttttatttgcagatgattgtttc |
12777977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 154 - 190
Target Start/End: Complemental strand, 48028076 - 48028040
Alignment:
| Q |
154 |
ttatatctcacctattatttgcaaatgattgtttcct |
190 |
Q |
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| T |
48028076 |
ttatatctcacctattatttgctgatgattgtttcct |
48028040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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