View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17383_high_5 (Length: 386)
Name: NF17383_high_5
Description: NF17383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17383_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 40510264 - 40510635
Alignment:
| Q |
1 |
ataatcaaaaagtttgcaggttgccatgatgaagatgaggaatcaagatcgtttatatacttggttgatgctttgaataaggaacaaaatgtaaagggtg |
100 |
Q |
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| T |
40510264 |
ataatcaaaaagtttgcaggttgccatgatgaagatgaggaatcaagatcgtttatatacttggttgatgctttgaataaggaacaaaatgtaaagggtg |
40510363 |
T |
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| Q |
101 |
attgaaaccgtcgcaactttgtactgtaatttcattactggaaatttatttgttttatcccctatttaaatttaaataacatagagttactttggtcaaa |
200 |
Q |
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| T |
40510364 |
attgaaaccgtcgtaactttgtactgtaatttcattactggaaatttatttgttttatcccctatttaaatttaaataacatagagttactttggtcaaa |
40510463 |
T |
|
| Q |
201 |
ggnnnnnnngcatatagttacaaacatttatactgaattttgttcatcttttattgtgtcttttctatataatttcaaacattagaacttgattcattat |
300 |
Q |
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| T |
40510464 |
ggaaaaaaagcatatagttacaaacatttatactgaattttgttcatcttttattgtgtcttttctatataatttcaaacattagaacttgattcattat |
40510563 |
T |
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| Q |
301 |
aaattaatcaagttctgcatacagataatgatttgaagattgttacaaaagtgaatccaataaagaacaata |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40510564 |
aaattaatcaagttctgcatacagataatgatttgaagattgttacaaaagtgaatccaataaagaacaata |
40510635 |
T |
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