View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17383_low_13 (Length: 237)
Name: NF17383_low_13
Description: NF17383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17383_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 49766980 - 49767037
Alignment:
| Q |
167 |
cgagtttaccaagtttttcttgaagacaaaaagcacagatcccaccagggttgtttct |
224 |
Q |
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| T |
49766980 |
cgagtttaccaagtttttcttgaagacaaaaagcacagatcccaccagggttgtttct |
49767037 |
T |
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Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 49766812 - 49766881
Alignment:
| Q |
2 |
atgaagttacagcagttgtagctgatacagtgttgatg---gaagaagaaggaggacaatgacgagtagt |
68 |
Q |
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| T |
49766812 |
atgaagttacagcagttgttgctgatacagtgttgatggaagaagaagaagaaggacaatgacgagtagt |
49766881 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 14137753 - 14137707
Alignment:
| Q |
169 |
agtttaccaagtttttcttgaagacaaaaagcacagatcccaccagg |
215 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
14137753 |
agtttaccaagtttttcttgaagacaaaaagcacatataccaccagg |
14137707 |
T |
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