View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17383_low_15 (Length: 222)
Name: NF17383_low_15
Description: NF17383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17383_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 27002385 - 27002587
Alignment:
| Q |
1 |
ctcgccaacaacaagaaatcagttaaactagttctctcactaggtattcaaattctcgatgagaattactctttaggaaaatctattacaattaaccaaa |
100 |
Q |
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||||| ||||| |||||||||||||| |||| ||||||||||||| |||||||||| ||||||||||||| |||||||||||| | |||| |||||||| |
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| T |
27002385 |
ctcgcgaacaataagaaatcagttaacctagctctctcactaggttctcaaattctcaatgagaattactcattaggaaaatctctcacaactaaccaaa |
27002484 |
T |
|
| Q |
101 |
tccttaaactcgcatcgaaaggacaacaacaaaacgccatcaacgttgttctaacggcagctgatgtgttagttgatggtttttgttcaagtaggtgtgg |
200 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27002485 |
tccttaaactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagccgctgatgtgttagttgacggtttttgttcaagtaggtgtgg |
27002584 |
T |
|
| Q |
201 |
aac |
203 |
Q |
| |
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||| |
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| T |
27002585 |
aac |
27002587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 26721672 - 26721869
Alignment:
| Q |
7 |
aacaacaagaaatcagttaaactagttctctcactaggtattcaaattctcgatgagaattactctttaggaaaatctattacaattaaccaaatcctta |
106 |
Q |
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|||||||||||||||||||| |||| ||||||||||||| ||||||||| || ||||| |||||||||||||||||| | |||| |||||||||||||| |
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| T |
26721672 |
aacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcacaactaaccaaatcctta |
26721771 |
T |
|
| Q |
107 |
aactcgcatcgaaaggacaacaacaaaacgccatcaacgttgttctaacggcagctgatgtgttagttgatggtttttgttcaagtaggtgtggaacc |
204 |
Q |
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| T |
26721772 |
atctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttcaagtaggtgtggaacc |
26721869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 26991421 - 26991618
Alignment:
| Q |
7 |
aacaacaagaaatcagttaaactagttctctcactaggtattcaaattctcgatgagaattactctttaggaaaatctattacaattaaccaaatcctta |
106 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||||| ||||||||| || ||||| |||||||||||||||||| | |||| |||||||||||||| |
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| T |
26991421 |
aacaacaagaaatcagttaacctagctctctcactaggttctcaaattcttgacgagaaatactctttaggaaaatctctcacaactaaccaaatcctta |
26991520 |
T |
|
| Q |
107 |
aactcgcatcgaaaggacaacaacaaaacgccatcaacgttgttctaacggcagctgatgtgttagttgatggtttttgttcaagtaggtgtggaacc |
204 |
Q |
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| T |
26991521 |
atctcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagctgctgatgtgttagttgacggtttttgttcaagtaggtgtggaacc |
26991618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 26996116 - 26996313
Alignment:
| Q |
7 |
aacaacaagaaatcagttaaactagttctctcactaggtattcaaattctcgatgagaattactctttaggaaaatctattacaattaaccaaatcctta |
106 |
Q |
| |
|
|||||||||||||||||||| |||| ||| |||||||||| ||||||| | || ||||| |||||||||||||||||| | |||| |||||||||||||| |
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| T |
26996116 |
aacaacaagaaatcagttaacctagctctatcactaggtactcaaattttggacgagaaatactctttaggaaaatctctcacaactaaccaaatcctta |
26996215 |
T |
|
| Q |
107 |
aactcgcatcgaaaggacaacaacaaaacgccatcaacgttgttctaacggcagctgatgtgttagttgatggtttttgttcaagtaggtgtggaacc |
204 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
26996216 |
aactcgcatcaaaaggacaacaacaaaacgccatcaacgttgtcctaacagccgctgatgtgttagttgacggtttttgttcaagtaggtgtggaacc |
26996313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 33821285 - 33821353
Alignment:
| Q |
132 |
aaacgccatcaacgttgttctaacggcagctgatgtgttagttgatggtttttgttcaagtaggtgtgg |
200 |
Q |
| |
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||||||||||||||||||||| || | ||||| ||| |||||||||| |||||||| ||||| ||||| |
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| T |
33821285 |
aaacgccatcaacgttgttctcacttcggctgacgtggtagttgatgggttttgttccagtagatgtgg |
33821353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 33811170 - 33811204
Alignment:
| Q |
49 |
caaattctcgatgagaattactctttaggaaaatc |
83 |
Q |
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||||||||||||||||||||||| ||||||||||| |
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| T |
33811170 |
caaattctcgatgagaattactcattaggaaaatc |
33811204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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