View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17383_low_2 (Length: 503)
Name: NF17383_low_2
Description: NF17383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17383_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 261 - 497
Target Start/End: Complemental strand, 4007003 - 4006765
Alignment:
| Q |
261 |
gttgaagtcaaaggggttaggttcagctcttgctttcttctgaccttcagctgttccggtcctgctctgatgttctagttctgctgcagtgttgtggcat |
360 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4007003 |
gttgaagtcaaaagggttaggttcagctgttgctttcttctgaccttcagctgttccagtcctgctctgatgttctagttctgctgcagtgttgtggcat |
4006904 |
T |
|
| Q |
361 |
tttgggatccgtttgacgttgtatcttgcttgctggactgctagtgttgcatcaatttcgtat--ttttatcatttgtagttgtcttggctgcttggcgt |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4006903 |
tttgggatccgtttgacgttgtatcttgcttgctggactgctagtgttgcatcaatttcgtatttttttatcatttgtagttgtcttggctgcttggcgt |
4006804 |
T |
|
| Q |
459 |
tcaagccctttggggcgttggtattattttgatgatgtc |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4006803 |
tcaagccctttggggcgttggtattattttgttgatgtc |
4006765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 4571642 - 4571788
Alignment:
| Q |
16 |
tctagttccttttgcatgccttgtaatgttaaccctgatgaataaagtgtatttagttatgttttgatagttactacttacttgccatcattcttggttc |
115 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||| ||||| |||||||||| ||| ||||||||| || |||||| |||||||||||||||||| |
|
|
| T |
4571642 |
tctagttctttttgtatgccttgttacattaacgctgataaataaagtgtgttttgttatgtttcaattgttact-------tgccatcattcttggttc |
4571734 |
T |
|
| Q |
116 |
ttcatttggtacatctttgattcttacatagtttggacaaactgagcctggagat |
170 |
Q |
| |
|
||| |||| |||||||||||||||||||||| || |||||||||| ||||||||| |
|
|
| T |
4571735 |
ttc-tttgatacatctttgattcttacataggtttgacaaactgatcctggagat |
4571788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 10220223 - 10220263
Alignment:
| Q |
131 |
tttgattcttacatagtttggacaaactgagcctggagata |
171 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
10220223 |
tttggttcttacataggttggacaaactgatcctggagata |
10220263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University