View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17383_low_5 (Length: 389)
Name: NF17383_low_5
Description: NF17383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17383_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 19 - 389
Target Start/End: Original strand, 18906721 - 18907103
Alignment:
| Q |
19 |
aaatcatacatcacagttatgggaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgc |
118 |
Q |
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| T |
18906721 |
aaatcatacatcacagttatgagaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaaatgacactttgcatgtccatgc |
18906820 |
T |
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| Q |
119 |
tttccagttttagaagttgaaacttcaactacctatctccaacacaaacaaaaaccataacaaataaatcatatatgatttgattaatcaatcatacaaa |
218 |
Q |
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| T |
18906821 |
tttccagttttagaagttgaaacttcaactacctatctccaacacaaacaaaaaccataacaaataaatcatacatgatttgattaatcaatcatacaaa |
18906920 |
T |
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| Q |
219 |
aaattgttacaatatcaatatatttcaaaaagtcaacacaacatggtgcaagtaaaaatg------------nnnnnnnnnncattagaaaagaaacctt |
306 |
Q |
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| T |
18906921 |
aaactgaaacaatatcaatatatttcaaaaagtcaacacaacatggtgcaagtaaaaatgatcaaaaatgaagaaaaaaaaacataagaaaagaaacctt |
18907020 |
T |
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| Q |
307 |
gcagggtctgtttttgataacaatgtgaccatttttgcggattgtaccagcttgttgtggatatgtctttgatgctccagcat |
389 |
Q |
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| T |
18907021 |
gcagggtctgttttttataacaatgtgaccatttttgcggattgtaccagcttgttgtggatatgtctttgatgctccagcat |
18907103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 153
Target Start/End: Original strand, 54580700 - 54580828
Alignment:
| Q |
25 |
tacatcacagttatgggaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgctttcca |
124 |
Q |
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| T |
54580700 |
tacatcacaattgtgggacgaaggaacaatatcttcaagttttttcccattgaagatatcaatagcaacaaagtgacactttgcatgtccatgctttcct |
54580799 |
T |
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| Q |
125 |
gttttagaagttgaaacttcaactaccta |
153 |
Q |
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| T |
54580800 |
gtttttgaagtagaaacctcaacaaccta |
54580828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 23 - 153
Target Start/End: Original strand, 45277722 - 45277852
Alignment:
| Q |
23 |
catacatcacagttatgggaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgctttc |
122 |
Q |
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| T |
45277722 |
catacatcacagttatgagaggaaggaacgatatcttcaagtttcttggaagtgaagatgtcaatagcaacaaagtgacatttagcatgaccgtgctttc |
45277821 |
T |
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| Q |
123 |
cagttttagaagttgaaacttcaactaccta |
153 |
Q |
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| T |
45277822 |
cagttttcgaggtggaaacttcaacaaccta |
45277852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 46047734 - 46047822
Alignment:
| Q |
23 |
catacatcacagttatgggaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatg |
111 |
Q |
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| T |
46047734 |
catacatcacagttgtgggaaaaaggcacgatatcttcaagtttctcagcagtgaccatatcaatcccaacaaaatgacatttagcatg |
46047822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 363
Target Start/End: Original strand, 45277954 - 45278015
Alignment:
| Q |
302 |
accttgcagggtctgtttttgataacaatgtgaccatttttgcggattgtaccagcttgttg |
363 |
Q |
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| T |
45277954 |
accttgcagggacggtttttgataacgatgtagccgttcttgcggattgttccagcttgttg |
45278015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 12829175 - 12829064
Alignment:
| Q |
41 |
gaagaaggaacaatatcttcaagttttttgccagtgaagatatcaataccaacaaagtgacactttgcatgtccatgctttccagttttagaagttgaaa |
140 |
Q |
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| T |
12829175 |
gaagagggcacaatatcttcaagctttttagaagtgaaaatatcaattgcaacaaagtggcacttagcatgtccatgcttaccggtctttgaagttgaaa |
12829076 |
T |
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| Q |
141 |
cttcaactacct |
152 |
Q |
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| T |
12829075 |
cctcaacaacct |
12829064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 12822116 - 12822027
Alignment:
| Q |
300 |
aaaccttgcagggtctgtttttgataacaatgtgaccatttttgcggattgtaccagcttgttgtggatatgtctttgatgctccagcat |
389 |
Q |
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| T |
12822116 |
aaaccttgcagggacgatttttgataacgatgtaaccatttttgcggatggttccggcttgttgaggataagtctttgaagctccggcat |
12822027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 300 - 389
Target Start/End: Complemental strand, 12827758 - 12827669
Alignment:
| Q |
300 |
aaaccttgcagggtctgtttttgataacaatgtgaccatttttgcggattgtaccagcttgttgtggatatgtctttgatgctccagcat |
389 |
Q |
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| T |
12827758 |
aaaccttgcagggacgatttttgataacgatgtaaccatttttgcggatggttccggcttgttgaggataagtctttgaagctccggcat |
12827669 |
T |
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