View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17383_low_7 (Length: 363)

Name: NF17383_low_7
Description: NF17383
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17383_low_7
NF17383_low_7
[»] chr6 (35 HSPs)
chr6 (101-261)||(27608139-27608299)
chr6 (48-261)||(27681931-27682141)
chr6 (101-261)||(27715529-27715686)
chr6 (101-258)||(27695599-27695756)
chr6 (101-200)||(26805554-26805653)
chr6 (126-258)||(27590183-27590312)
chr6 (101-200)||(27674587-27674686)
chr6 (114-193)||(25491191-25491270)
chr6 (114-257)||(26952583-26952723)
chr6 (135-200)||(26887824-26887889)
chr6 (126-258)||(26058890-26059019)
chr6 (126-258)||(26078860-26078989)
chr6 (126-200)||(26826913-26826987)
chr6 (126-199)||(28789399-28789472)
chr6 (126-258)||(25547951-25548080)
chr6 (101-199)||(26851561-26851659)
chr6 (126-190)||(25486406-25486470)
chr6 (126-190)||(25513911-25513975)
chr6 (126-258)||(26638381-26638513)
chr6 (126-258)||(26744347-26744479)
chr6 (101-198)||(26659009-26659106)
chr6 (101-198)||(26764980-26765077)
chr6 (126-199)||(28795423-28795496)
chr6 (126-190)||(25582743-25582807)
chr6 (114-200)||(26061598-26061682)
chr6 (114-200)||(26081568-26081652)
chr6 (127-256)||(26876539-26876665)
chr6 (114-200)||(25077045-25077131)
chr6 (114-200)||(26962130-26962216)
chr6 (224-261)||(26626103-26626140)
chr6 (224-261)||(26732080-26732117)
chr6 (126-190)||(26146036-26146100)
chr6 (335-363)||(27674840-27674868)
chr6 (335-363)||(27681826-27681854)
chr6 (138-198)||(28246414-28246474)
[»] chr8 (1 HSPs)
chr8 (101-261)||(29270865-29271025)
[»] scaffold0349 (1 HSPs)
scaffold0349 (101-261)||(16259-16416)
[»] chr2 (1 HSPs)
chr2 (118-199)||(17990182-17990263)
[»] chr1 (3 HSPs)
chr1 (101-258)||(265354-265508)
chr1 (121-156)||(28124680-28124715)
chr1 (121-156)||(28129711-28129746)
[»] scaffold0419 (1 HSPs)
scaffold0419 (126-199)||(10549-10622)
[»] scaffold0277 (2 HSPs)
scaffold0277 (126-199)||(1761-1834)
scaffold0277 (126-199)||(10727-10800)
[»] chr4 (6 HSPs)
chr4 (101-198)||(18652548-18652645)
chr4 (101-198)||(18676630-18676727)
chr4 (101-198)||(18686673-18686770)
chr4 (101-198)||(18721144-18721241)
chr4 (101-200)||(18696479-18696578)
chr4 (101-198)||(18728569-18728666)
[»] scaffold0038 (1 HSPs)
scaffold0038 (138-198)||(46576-46636)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 6e-62; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 101 - 261
Target Start/End: Original strand, 27608139 - 27608299
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||| ||||||||||||||||||||||||||||||    
T  27608139 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaagtgtgagtcccctgctttggtgctcaaaccaatctggtatcccc 27608238  T
Q  201 agctctgttcggtttgcaaattcaatatgggtgcatccagcctcatgtagtttctgtttgt 261  Q
     ||||||||| |||||  ||||||| || ||||||||||||||||||||||||||||||||    
T  27608239 tgctctgttccgtttgggaattcaaaataggtgcatccagcctcatgtagtttctgtttgt 27608299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 48 - 261
Target Start/End: Complemental strand, 27682141 - 27681931
Alignment:
Q  48 atttcgtatccattcacacaaaaattgacccttgtgcaataactatagccatacggaagaataaatatacaagttattgaagggatttctttacgaaacc 147  Q
    ||||| |||||||||||| ||| |||||| ||||||  |||   || ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  27682141 atttcatatccattcacaaaaacattgacacttgtggcatactcattgcctttcggaagaataaatatacaagttattgaagggatttctttacgaaacc 27682042  T
Q  148 agaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaatatgggtgcatccagcctcatg 247  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||   |||| |||  ||||  || | ||| | ||||||||| ||||||||    
T  27682041 agaaagaaattatgggtcccctgctttggtgctcaaaccaatctggtatccc---ctctcttccatttgggaaataaatcttggtgcatcccgcctcatg 27681945  T
Q  248 tagtttctgtttgt 261  Q
    ||||||||||||||    
T  27681944 tagtttctgtttgt 27681931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 101 - 261
Target Start/End: Original strand, 27715529 - 27715686
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
T  27715529 cggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatccc- 27715627  T
Q  201 agctctgttcggtttgcaaattcaatatgggtgcatccagcctcatgtagtttctgtttgt 261  Q
       ||||||| |||||  |||| ||||| |||||||||||||| |||||||||||||||||    
T  27715628 --atctgttccgtttgggaatttaatataggtgcatccagcctgatgtagtttctgtttgt 27715686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 101 - 258
Target Start/End: Original strand, 27695599 - 27695756
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||||||||||| ||||||| ||| ||||||||||||||| ||||||| ||||||||| ||  |||||| ||||||||||||||||||||||||||||||    
T  27695599 cggaagaataaaaatacaagatatagaagggatttctttatgaaaccaaaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccc 27695698  T
Q  201 agctctgttcggtttgcaaattcaatatgggtgcatccagcctcatgtagtttctgtt 258  Q
    |||||||||| |||||  || |||| | | ||||||| |||||||||||||| |||||    
T  27695699 agctctgttccgtttgggaaatcaaaacgagtgcatcgagcctcatgtagttgctgtt 27695756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 101 - 200
Target Start/End: Complemental strand, 26805653 - 26805554
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||    
T  26805653 cggaagaataaaaatacatgttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccttgctttggtgctcaaaccaatctggtatcccc 26805554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 126 - 258
Target Start/End: Original strand, 27590183 - 27590312
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaa 225  Q
    ||||||||||||||||||||||||||||||||| ||  |||||| ||||||||||||||||||||||||||||||   ||||||| |||||  || | ||    
T  27590183 gaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccc---tctgttccgtttgggaaataaa 27590279  T
Q  226 tatgggtgcatccagcctcatgtagtttctgtt 258  Q
     ||  ||||||| |||||||||||||| |||||    
T  27590280 aataagtgcatcgagcctcatgtagttcctgtt 27590312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 27674587 - 27674686
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||| ||||| | ||| |||| || ||||||||||||||||||||||||||||||||| ||  |||||| ||||||||||||||||||||||||||||||    
T  27674587 cggaggaatacaaatataagtcatagaagggatttctttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatctggtatcccc 27674686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 25491191 - 25491270
Alignment:
Q  114 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctgg 193  Q
    |||||| ||||||||||||||||||||| |||||||||||||||| |  |||||||| |||||||||| |||||||||||    
T  25491191 atacaacttattgaagggatttctttacaaaaccagaaagaaattgtccgtcccctaatttggtgctcgaaccaatctgg 25491270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 257
Target Start/End: Complemental strand, 26952723 - 26952583
Alignment:
Q  114 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggt 213  Q
    ||||||||||| |||||||| | | |||||||||||||||||||| ||  ||||||  |||||||||||||||||||||| |||||   |||||||  ||    
T  26952723 atacaagttatagaagggatctttctacgaaaccagaaagaaattgtgtctcccctggtttggtgctcaaaccaatctggaatccc---ctctgttttgt 26952627  T
Q  214 ttgcaaattcaatatgggtgcatccagcctcatgtagtttctgt 257  Q
    |||  || | ||||| ||||||||||||||  | ||||||||||    
T  26952626 ttgggaaatgaatataggtgcatccagccttgtttagtttctgt 26952583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 135 - 200
Target Start/End: Complemental strand, 26887889 - 26887824
Alignment:
Q  135 tctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||||||||||||||||||||| | || ||||||| ||||||||||||||||||||||| ||||||    
T  26887889 tctttacgaaaccagaaagaaagtgtgtgtcccctgctttggtgctcaaaccaatctggaatcccc 26887824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 26059019 - 26058890
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaa 225  Q
    ||||||| |||||||  |||||||||||||||| ||  |||||| |||||||||||||||||||| || ||||     || |||  |||||  |||  ||    
T  26059019 gaagggagttctttatcaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatcaggaatcc---tatccgttgtgtttgggaatagaa 26058923  T
Q  226 tatgggtgcatccagcctcatgtagtttctgtt 258  Q
    ||||||||||||||| |||||||||||||||||    
T  26058922 tatgggtgcatccagactcatgtagtttctgtt 26058890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 26078989 - 26078860
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaa 225  Q
    ||||||| |||||||  |||||||||||||||| ||  |||||| |||||||||||||||||||| || ||||     || |||  |||||  |||  ||    
T  26078989 gaagggagttctttatcaaaccagaaagaaattgtgtctcccctgctttggtgctcaaaccaatcaggaatcc---tatccgttgtgtttgggaatagaa 26078893  T
Q  226 tatgggtgcatccagcctcatgtagtttctgtt 258  Q
    ||||||||||||||| |||||||||||||||||    
T  26078892 tatgggtgcatccagactcatgtagtttctgtt 26078860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 26826987 - 26826913
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||||||||| |||||||||||||||||||||| ||  ||| || |||||||||||||||| |||||| ||||||    
T  26826987 gaagggatttttttacgaaaccagaaagaaattgtgtctcctctgctttggtgctcaaaccgatctggaatcccc 26826913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 28789472 - 28789399
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 199  Q
    |||||||| | |||||||||||||||||||||| ||  |||||| ||||||||||| ||||||||||| |||||    
T  28789472 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 28789399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 25548080 - 25547951
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaa 225  Q
    ||||||| |||||||  |||||||||||||||| |   |||||| |||||||||||||||||||| || ||||     ||||||  |||||  |||| ||    
T  25548080 gaagggagttctttatcaaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatcaggaatcc---tttctgttgtgtttgggaattgaa 25547984  T
Q  226 tatgggtgcatccagcctcatgtagtttctgtt 258  Q
     ||||||||||||||  ||||||||||||||||    
T  25547983 aatgggtgcatccagattcatgtagtttctgtt 25547951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 199
Target Start/End: Complemental strand, 26851659 - 26851561
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 199  Q
    ||||| |||||  ||||| ||||| |||||||| | ||||||||||||||| |||||| ||  | |||| ||||||||||| ||||||||||| |||||    
T  26851659 cggaacaataataatacatgttatagaagggatctttttacgaaaccagaaggaaattgtgttttccctgctttggtgctcgaaccaatctggaatccc 26851561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 25486470 - 25486406
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatc 190  Q
    ||||||| |||||||  |||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  25486470 gaagggagttctttatcaaaccagaaagaaattgtgcctcccctgctttggtgctcaaaccaatc 25486406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 25513975 - 25513911
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatc 190  Q
    ||||||||||||||| || ||||||||| |||| ||  |||||| ||||||||||||||||||||    
T  25513975 gaagggatttctttatgataccagaaagcaattgtgactcccctgctttggtgctcaaaccaatc 25513911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 26638513 - 26638381
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatg---ggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaatt 222  Q
    |||||||| | |||||||||||||||||||||| ||    ||||||| ||||| ||||| ||||||||||| ||| |   |||||||| | ||| |||      
T  26638513 gaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctc---ctctgttctggttggaaaac 26638417  T
Q  223 caatatgggtgcatccagcctcatgtagtttctgtt 258  Q
     |||||  ||||||||||| ||||||||||||||||    
T  26638416 gaatatcagtgcatccagcttcatgtagtttctgtt 26638381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 258
Target Start/End: Complemental strand, 26744479 - 26744347
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatg---ggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaatt 222  Q
    |||||||| | |||||||||||||||||||||| ||    ||||||| ||||| ||||| ||||||||||| ||| |   |||||||| | ||| |||      
T  26744479 gaagggatctttttacgaaaccagaaagaaattgtgccatgtcccctgctttgatgctcgaaccaatctggaatctc---ctctgttctggttggaaaac 26744383  T
Q  223 caatatgggtgcatccagcctcatgtagtttctgtt 258  Q
     |||||  ||||||||||| ||||||||||||||||    
T  26744382 gaatatcagtgcatccagcttcatgtagtttctgtt 26744347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 26659106 - 26659009
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 198  Q
    |||||||| ||  |||||| | || |||||||| | |||||||||||||||||||| | |  |||||||  |||||||||| ||||||||||| ||||    
T  26659106 cggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcc 26659009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 198
Target Start/End: Complemental strand, 26765077 - 26764980
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 198  Q
    |||||||| ||  |||||| | || |||||||| | |||||||||||||||||||| | |  |||||||  |||||||||| ||||||||||| ||||    
T  26765077 cggaagaagaagaatacaaataatagaagggatctttttacgaaaccagaaagaaactgtttgtcccctgatttggtgctcgaaccaatctgggatcc 26764980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 28795496 - 28795423
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 199  Q
    |||||||| | ||||| ||||||||| |||||| ||  |||||| ||||||||||| ||||||||||| |||||    
T  28795496 gaagggatctttttacaaaaccagaaggaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 28795423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 25582807 - 25582743
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatc 190  Q
    ||||||| |||||||  |||||||||||||||| |   |||||| ||||||||||||||||||||    
T  25582807 gaagggagttctttatcaaaccagaaagaaattgtctctcccctgctttggtgctcaaaccaatc 25582743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 26061682 - 26061598
Alignment:
Q  114 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||| |||||| |||||||||| |||||||||||||||| ||||  || ||||| |  |||||||||  ||||||||||| ||||||    
T  26061682 atactagttatagaagggatttatttacgaaaccagaaaaaaat--tgtgtcccgtgatttggtgctttaaccaatctggaatcccc 26061598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 26081652 - 26081568
Alignment:
Q  114 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||| |||||| |||||||||| |||||||||||||||| ||||  || ||||| |  |||||||||  ||||||||||| ||||||    
T  26081652 atactagttatagaagggatttatttacgaaaccagaaaaaaat--tgtgtcccgtgatttggtgctttaaccaatctggaatcccc 26081568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 256
Target Start/End: Complemental strand, 26876665 - 26876539
Alignment:
Q  127 aagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccccagctctgttcggtttgcaaattcaat 226  Q
    ||||||| | |||||||||||||||||||||| |  ||||| |  ||||||| |  ||||| ||||| ||||||   ||||||| |||||  |    |||    
T  26876665 aagggatctttttacgaaaccagaaagaaattgtttgtcccgtgatttggtgttggaaccagtctggaatcccc---tctgttccgtttgggagaagaat 26876569  T
Q  227 atgggtgcatccagcctcatgtagtttctg 256  Q
    || |||||||||||||||||||||||||||    
T  26876568 ataggtgcatccagcctcatgtagtttctg 26876539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 25077131 - 25077045
Alignment:
Q  114 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||||||| || |||||||| | ||| |||||||||||||||||| ||  ||||    |||||||||| ||||||||||| ||||||    
T  25077131 atacaagtaatagaagggatctttttgcgaaaccagaaagaaattgtgtctccctccatttggtgctcgaaccaatctggaatcccc 25077045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 26962216 - 26962130
Alignment:
Q  114 atacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    ||||| ||||| | |||||| | ||| ||| |||||||||||| | ||  |||| | ||||||||||||||||||||||| ||||||    
T  26962216 atacatgttatagtagggatctttttgcgataccagaaagaaaatgtgtctccctttctttggtgctcaaaccaatctggaatcccc 26962130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 26626140 - 26626103
Alignment:
Q  224 aatatgggtgcatccagcctcatgtagtttctgtttgt 261  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  26626140 aatattggtgcatccagcctcatgtactttctgtttgt 26626103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 261
Target Start/End: Complemental strand, 26732117 - 26732080
Alignment:
Q  224 aatatgggtgcatccagcctcatgtagtttctgtttgt 261  Q
    ||||| |||||||||||||||||||| |||||||||||    
T  26732117 aatattggtgcatccagcctcatgtactttctgtttgt 26732080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 190
Target Start/End: Complemental strand, 26146100 - 26146036
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatc 190  Q
    ||||||| || |||| || ||||||||| |||| ||  |||||| ||||||||||||||||||||    
T  26146100 gaagggagttttttatgataccagaaagcaattttgcctcccctgctttggtgctcaaaccaatc 26146036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 363
Target Start/End: Original strand, 27674840 - 27674868
Alignment:
Q  335 acaactaacctgactcattaacattcttc 363  Q
    |||||||||||||||||||||||||||||    
T  27674840 acaactaacctgactcattaacattcttc 27674868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 335 - 363
Target Start/End: Complemental strand, 27681854 - 27681826
Alignment:
Q  335 acaactaacctgactcattaacattcttc 363  Q
    |||||||||||||||||||||||||||||    
T  27681854 acaactaacctgactcattaacattcttc 27681826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 28246474 - 28246414
Alignment:
Q  138 ttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 198  Q
    ||||||||||| ||||||||| |  ||||| | |||||||| |||||||||||||| ||||    
T  28246474 ttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 28246414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 101 - 261
Target Start/End: Original strand, 29270865 - 29271025
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||    
T  29270865 cggaagcataaaaatacaagtaatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgttcgaaccaatctggtatcccc 29270964  T
Q  201 agctctgttcggtttgcaaattcaatatgggtgcatccagcctcatgtagtttctgtttgt 261  Q
     |||||||||  ||| |||||| ||||| ||||||||||| ||||||||||||||||||||    
T  29270965 tgctctgttccattttcaaattgaatataggtgcatccagtctcatgtagtttctgtttgt 29271025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 101 - 261
Target Start/End: Complemental strand, 16416 - 16259
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    ||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||     
T  16416 cggaaaaataattatacaagttatagaagggatttctttacgaaaccagaaagaaattgtgggtcccctgctttggtgctcaaaccaatctggtatccc- 16318  T
Q  201 agctctgttcggtttgcaaattcaatatgggtgcatccagcctcatgtagtttctgtttgt 261  Q
       ||||||| |||||  |||| ||||| |||||||||||||| |||||||||||||||||    
T  16317 --atctgttccgtttgggaatttaatataggtgcatccagcctgatgtagtttctgtttgt 16259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 199
Target Start/End: Original strand, 17990182 - 17990263
Alignment:
Q  118 aagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 199  Q
    ||||||| ||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||| |||||    
T  17990182 aagttatagaagggatttctttacgaaaccagaaagaaattgtgtgccccctgctttggtgctcaaaccaatctggaatccc 17990263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 101 - 258
Target Start/End: Original strand, 265354 - 265508
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||||||||||  ||| |||| |  |||||||| | |||||||||||||||||||||| ||  |||| | |||||||||||||||||||||||||||||     
T  265354 cggaagaataataataaaagtaacagaagggatctttttacgaaaccagaaagaaattgtgtttcccttgctttggtgctcaaaccaatctggtatccc- 265452  T
Q  201 agctctgttcggttt-gcaaattcaatatgggtgcatccagcctcatgtagtttctgtt 258  Q
      |||||||| |||| | |||| ||| ||  ||||||| ||| ||||||||||||||||    
T  265453 --ctctgttccgtttgggaaatacaa-ataagtgcatcgagcttcatgtagtttctgtt 265508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 28124680 - 28124715
Alignment:
Q  121 ttattgaagggatttctttacgaaaccagaaagaaa 156  Q
    |||| |||||||||||||||||||||||||||||||    
T  28124680 ttatagaagggatttctttacgaaaccagaaagaaa 28124715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 121 - 156
Target Start/End: Original strand, 28129711 - 28129746
Alignment:
Q  121 ttattgaagggatttctttacgaaaccagaaagaaa 156  Q
    |||| |||||||||||||||||||||||||||||||    
T  28129711 ttatagaagggatttctttacgaaaccagaaagaaa 28129746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 126 - 199
Target Start/End: Complemental strand, 10622 - 10549
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 199  Q
    |||||||| | |||||||||||||||||||||| ||  |||||| ||||||||||| ||||||||||| |||||    
T  10622 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 10549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 1761 - 1834
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 199  Q
    |||||||| | |||||||||||||||||||||| ||  |||||| ||||||||||| ||||||||||| |||||    
T  1761 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 1834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 10727 - 10800
Alignment:
Q  126 gaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatccc 199  Q
    |||||||| | |||||||||||||||||||||| ||  |||||| ||||||||||| ||||||||||| |||||    
T  10727 gaagggatctttttacgaaaccagaaagaaattgtgtctcccctgctttggtgctcgaaccaatctggaatccc 10800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 18652548 - 18652645
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 198  Q
    |||||||||||  ||| ||||||| |||||||| | |||||| |||||||||||||||    | ||||| ||||| ||||| ||||||||||| ||||    
T  18652548 cggaagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18652645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 18676630 - 18676727
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 198  Q
    |||||||||||  ||| ||||||| |||||||| | |||||| |||||||||||||||    | ||||| ||||| ||||| ||||||||||| ||||    
T  18676630 cggaagaataataatagaagttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18676727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 18686673 - 18686770
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 198  Q
    ||||||||||| |||| ||||||| |||||||| | |||||  |||||||||||||||    | ||||| ||||| ||||| ||||||||||| ||||    
T  18686673 cggaagaataattatagaagttatagaagggatctttttacagaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcc 18686770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 18721144 - 18721241
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 198  Q
    |||||||||||  ||| ||||||| |||||||| | |||||  |||||||||||||||    | ||||| ||||||||||| ||||||||||| ||||    
T  18721144 cggaagaataataataaaagttatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttggtgctcgaaccaatctggaatcc 18721241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 101 - 200
Target Start/End: Original strand, 18696479 - 18696578
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcccc 200  Q
    |||||||||||  ||| || |||| |||||||| | |||||| |||||||||||||||    | ||||| ||||| ||||| ||||||||||| ||||||    
T  18696479 cggaagaataataataaaatttatagaagggatctttttacggaaccagaaagaaattgattgacccctgctttgatgctcgaaccaatctggaatcccc 18696578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 198
Target Start/End: Original strand, 18728569 - 18728666
Alignment:
Q  101 cggaagaataaatatacaagttattgaagggatttctttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 198  Q
    |||||||||||  ||| ||||||| |||||||| | |||||  |||||||||||||||    | ||||| ||||| ||||| ||||||||||| ||||    
T  18728569 cggaagaataataataaaagttatagaagggatctttttacagaaccagaaagaaattgaatgacccctgctttgatgctcgaaccaatctggaatcc 18728666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 138 - 198
Target Start/End: Complemental strand, 46636 - 46576
Alignment:
Q  138 ttacgaaaccagaaagaaattatgggtcccctactttggtgctcaaaccaatctggtatcc 198  Q
    ||||||||||| ||||||||| |  ||||| | |||||||| |||||||||||||| ||||    
T  46636 ttacgaaaccaaaaagaaattgtatgtcccatgctttggtgatcaaaccaatctggaatcc 46576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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