View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17383_low_9 (Length: 325)

Name: NF17383_low_9

Description: NF17383

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17383_low_9

[»] chr5 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr5 (Bit Score: 133; Significance: 4e-69; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 133; E-Value: 4e-69

Query Start/End: Original strand, 34 - 226

Target Start/End: Complemental strand, 6419145 - 6418953

Alignment:

Q	34	atccataacatgtgggtttggatttaatgggtctatccgagataatttgtgaacaacctcattcacttgtctcatgttgaactcgatacgagagttctga	133	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	6419145	atccatgacatgtgagtttggatttaatgaatctatctgagataactcgtgaacagcctcattcacttgtctcatgttgaactcaacacgagagttctga	6419046	T

Q	134	aaactagtagctaacagtcgtgtgccaaacatatatgatataatcaaattcactactatcaactaaacatgttaaaatcaattttgacttatt	226	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6419045	aaactagtaactaacaatcgtgtgccaagcatatatgatacaatcaaattcactactatcaattaaacatgttaaaatcaattttgacttatt	6418953	T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 53 - 135

Target Start/End: Original strand, 1479255 - 1479337

Alignment:

Q	53	ggatttaatgggtctatccgagataatttgtgaacaacctcattcacttgtctcatgttgaactcgatacgagagttctgaaa	135	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|
T	1479255	ggatttaatggggctgtccgagctaacttgtgagtgaccccatttacttgcctcctattgaactcgatatgagagttctgaaa	1479337	T

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