View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17384_high_10 (Length: 219)
Name: NF17384_high_10
Description: NF17384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17384_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 201
Target Start/End: Original strand, 14722816 - 14723005
Alignment:
| Q |
12 |
gattattctttggattctactccctaagttctggaattggtatattatcaaccttttccttttattcgttactttgctatgattattcaactgcatcctt |
111 |
Q |
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| T |
14722816 |
gattattctttggattctactccctaagttctggaattggtatattatcaaccttttccttttattcgttactttgctatgtttattcaactgcatcctt |
14722915 |
T |
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| Q |
112 |
aataattaatatcattaagctcttccttgctacgcatccaaatgctgctatcgctcatcctccaaaaccagaaccacacgatccatctgc |
201 |
Q |
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| T |
14722916 |
aataattaatatcactaagctcttccttgctacgcatccaaatgctgctatcgctcatcctccaaaaccggaaccacacgatccatctgc |
14723005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 24634306 - 24634208
Alignment:
| Q |
17 |
ttctttggattctactccctaagttctggaattggtatattatcaaccttttccttttattcgttactttgctatgattattcaactgcatccttaata |
115 |
Q |
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| T |
24634306 |
ttctttggattctactccctaagttctggaattggtatatcatcaatctattccttttaatggttatttcattatgtttcttcaactgcatccttaata |
24634208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 24679977 - 24679885
Alignment:
| Q |
17 |
ttctttggattctactccctaagttctggaattggtatattatcaaccttttccttttattcgttactttgctatgattattcaactgcatcc |
109 |
Q |
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| T |
24679977 |
ttctttggattctactccctgaattctggaattggtatattatcaacttattccttttaatggttacttctttatgtttcttcaactgcatcc |
24679885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 24656410 - 24656352
Alignment:
| Q |
17 |
ttctttggattctactccctaagttctggaattggtatattatcaaccttttcctttta |
75 |
Q |
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| T |
24656410 |
ttctttggattctgctccctgatttctggaattggtatatcatcaacttattcctttta |
24656352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 75
Target Start/End: Complemental strand, 24676917 - 24676864
Alignment:
| Q |
22 |
tggattctactccctaagttctggaattggtatattatcaaccttttcctttta |
75 |
Q |
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| T |
24676917 |
tggattctactccctgacttctggaattggtatatcatcaatctatccctttta |
24676864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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