View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17384_high_7 (Length: 248)
Name: NF17384_high_7
Description: NF17384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17384_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 36865361 - 36865221
Alignment:
| Q |
1 |
aggatgccacgtatatccaacctattttggagattactgctgatgaacgtctcaatgttgatg----catctcaagagagaaccatagagaaacatttgg |
96 |
Q |
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| T |
36865361 |
aggatgccacgtatatccaacctattttggagattactgctgatgaacgtctcaatgttgatatatacatctcaagagagaaccatagagaaacatttgg |
36865262 |
T |
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| Q |
97 |
atttttctcccaaaggagatcaaattacaaattatgatatt |
137 |
Q |
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| T |
36865261 |
atttttctcccaaaggagatcaaattacaaattatgatatt |
36865221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 136 - 248
Target Start/End: Complemental strand, 36865188 - 36865076
Alignment:
| Q |
136 |
ttctcaagagtcaagactcttgtaattccaaggtagttgagcatttggaaaaactaaaggtcttgtttagtcacaactttgagataatttattctgacgt |
235 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36865188 |
ttctcaagagtcaagactcttgtaattccaaggtagtagagcatttggaaaaactaaaggtcttgtttagtcacaactttgagataatttattctgacgt |
36865089 |
T |
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| Q |
236 |
tgccatctacaac |
248 |
Q |
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| T |
36865088 |
tgccatctacaac |
36865076 |
T |
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