View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17384_high_9 (Length: 228)
Name: NF17384_high_9
Description: NF17384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17384_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27061186 - 27061407
Alignment:
| Q |
1 |
cacggtggctgccaccaaaacagatgtcaggctcagagttgcaactaaaaataaaaactttaactcaaatttatcnnnnnnnnnnnn-gttgtttactca |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27061186 |
cacggtggctgccaccaaaacagatgtcaggctcagagt-gcaactaaaaataaaaactttaactcaaatttatcaacaaaaaaaaaagttgtttactca |
27061284 |
T |
|
| Q |
100 |
tgcatacaaaaagttccatatatatatccagctcaaatgcactgatcaaagccataaaaaacggtaaggagcagggcaat-aaaggacataaactaactt |
198 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||| |
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| T |
27061285 |
tgcatacaaaaagttccatacatat--ccagctcaaatgcactgatcaaagccataaacaaaggtaaggagcagggcaataaaaggacataaactaactt |
27061382 |
T |
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| Q |
199 |
tgtatgataatacaagaacatgtgt |
223 |
Q |
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||||||||||||||||||||||||| |
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| T |
27061383 |
tgtatgataatacaagaacatgtgt |
27061407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 27384027 - 27384094
Alignment:
| Q |
4 |
ggtggctgccaccaaaacagatgtcaggctcagagttgcaactaaaaataaaaactttaactcaaattt |
72 |
Q |
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||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27384027 |
ggtggttgccaccaaaacagatgtcaggctcaga-ttgcaactaaaaataaaaactttaactcaaattt |
27384094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 96 - 224
Target Start/End: Original strand, 24641762 - 24641889
Alignment:
| Q |
96 |
ctcatgcatacaaaaagttccatatatatatccagctcaaatgcactgatcaaagccataaaaaacggtaaggagcagggcaat-aaaggacataaacta |
194 |
Q |
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|||||||||||||||||| |||| |||| |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
24641762 |
ctcatgcatacaaaaagtaacatacatat--ccagctcaaatgcatcgatcgaagccataaaaaacggtaaggagcagggcaataaaaggacataaacta |
24641859 |
T |
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| Q |
195 |
actttgtatgataatacaagaacatgtgtg |
224 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24641860 |
actttgtatgataatacaagaacatgtgtg |
24641889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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