View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17384_low_2 (Length: 612)
Name: NF17384_low_2
Description: NF17384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17384_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 286 - 534
Target Start/End: Complemental strand, 2755413 - 2755163
Alignment:
| Q |
286 |
tgatctactataatttttcaaaatcaccgcaaatta--atgtaattctgtcatatccaccatgatatagagttatctgataatgtcaatttcttgcaagc |
383 |
Q |
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| T |
2755413 |
tgatccactataatttttcaaaatcacggcaaattataatttggttctgtaatatccaccatgatatagagttatttgataatgtcaatttcatgcaagc |
2755314 |
T |
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| Q |
384 |
taccgagtatgtctttagaccgagactcatgatctgggaccacatcctagaaaacattttttctgatttttattataacactattgtatgttggcttcca |
483 |
Q |
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| T |
2755313 |
taccaagtatgtctttagaccgagattcatgatctgggaccacatcctggaaaacattttttctgatttttatgataacactattgtatgttggcttcca |
2755214 |
T |
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| Q |
484 |
aataacattgtcaatggtaggtaggcaggcgtgcttgactgtaaaaataca |
534 |
Q |
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| T |
2755213 |
aataacattgtcaatggtaggtaggcaggcgtgcttgactataaaaataca |
2755163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 70 - 271
Target Start/End: Complemental strand, 2768403 - 2768201
Alignment:
| Q |
70 |
ttgttatcaaccgatggtaatatgatgaattgaaacatgattagttttatcaacttggtactatatgcagacgatgttttttcatagaaaaaaggtttat |
169 |
Q |
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| T |
2768403 |
ttgttatcaacccatcgtaatatgatgaaatgaaaggtgattagttttatcaacttggtactatatgcagacgatgttttttcaaagaaaaaaggtttat |
2768304 |
T |
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| Q |
170 |
tattctgtattttgtcaactgaatgtgatcaagtatgaatggttgttttattcaatgattttatttatcctaccccatttgaaattcaacag-cttagca |
268 |
Q |
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| T |
2768303 |
tattctgtattttgtcaaccgaatgtgatcaagtatgaatgcttgttttattcaatgattttatctctcctaccccatttgaaattcaacagacttagca |
2768204 |
T |
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| Q |
269 |
tat |
271 |
Q |
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||| |
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| T |
2768203 |
tat |
2768201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 304 - 569
Target Start/End: Complemental strand, 2768119 - 2767844
Alignment:
| Q |
304 |
caaaatcaccgcaaattaatgtaattctgtcatatccaccatgatatagagttatctgataatgtcaatttcttgcaagctaccgagtatgtctttagac |
403 |
Q |
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| T |
2768119 |
caaaatcacaacagatcaatgtgattctgtcatatccaccatgacatagagttatttgatactgtcaatttcttgcaagctactgagtatgtctatagac |
2768020 |
T |
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| Q |
404 |
cgagac--------tcatgatctgggaccacatcctagaaaacattttttctgatttttattataacactattgtatgttggcttccaaataacattgtc |
495 |
Q |
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| T |
2768019 |
tgagtcactaagattcatgatcttggaccaaatcctataaaacattttttctgtttattataataacactattggatattagcttccaaataacattgtc |
2767920 |
T |
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| Q |
496 |
aatggta--ggtaggcaggcgtgcttgactgtaaaaatacatcatgtctaaatcatgtatatatgaatatgataaa |
569 |
Q |
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| T |
2767919 |
aagggtataggtaagcaggcgtgcttgactataataatacatcatgtctaaatcatgtatatatgaatatgataaa |
2767844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 2755627 - 2755525
Alignment:
| Q |
1 |
acagtaactttaaatggtgccaatgaaagttaagcttcaaaaagtcaaactaaaggaatgccatcaattttgttatcaaccgatggtaatatgatgaatt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | |
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| T |
2755627 |
acagtaactttaaatggtgccaaggaaagttaagcttcaaaaagtcaaactaaaggaatgccatcacttttgttatcaacctatggtaatatgatgaaat |
2755528 |
T |
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| Q |
101 |
gaa |
103 |
Q |
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||| |
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| T |
2755527 |
gaa |
2755525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 2805215 - 2805093
Alignment:
| Q |
114 |
ttttatcaacttggtactatatgcagacgatgttttttcatagaaaaaaggtttattattctgtattttgtcaactgaatgtgatcaagtatgaatggtt |
213 |
Q |
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| T |
2805215 |
ttttatcaacttggtattaaatgcagaccatgtttct-caaagaaaaaaggtttattattctgtaattttaacactgaatgtgatcaagtatgaatgatt |
2805117 |
T |
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| Q |
214 |
gttttattcaatgattttatttat |
237 |
Q |
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| T |
2805116 |
gttttattcaatgcttttatttat |
2805093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 103 - 261
Target Start/End: Complemental strand, 2806597 - 2806442
Alignment:
| Q |
103 |
aacatgattagttttatcaacttggtactatatgcagacgatgttttttcatagaaaaaaggtttattattctgtattttgtcaactgaatgtgatcaag |
202 |
Q |
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||||||||||||||| ||||||||||| ||||||||||| ||||||| || ||| ||||||| | |||| ||| | |||||||||| ||||| |
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| T |
2806597 |
aacatgattagttttgtcaacttggtattatatgcagaccatgttttctccaagattttt--tttattagtttgtaattttaccactgaatgtggtcaag |
2806500 |
T |
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| Q |
203 |
tatgaatggttgttttattcaatgattttatttatcctaccccatttgaaattcaacag |
261 |
Q |
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| T |
2806499 |
tatgaattgttgttttattcaatgcttttatttatgctacccca-ttgaaatacaacag |
2806442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 2755522 - 2755463
Alignment:
| Q |
165 |
tttattattctgtattttgtcaactgaatgtgatcaagtatgaatggttgttttattcaa |
224 |
Q |
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| T |
2755522 |
tttattattctgtattttgtcaacggaatgtgatcaagtatgaattcttgttttattcaa |
2755463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 203 - 261
Target Start/End: Complemental strand, 2748180 - 2748122
Alignment:
| Q |
203 |
tatgaatggttgttttattcaatgattttatttatcctaccccatttgaaattcaacag |
261 |
Q |
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| T |
2748180 |
tatgaatggttgtttaattgaatgattttatttatgctaccccgtttgaaattcaacag |
2748122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 457
Target Start/End: Complemental strand, 2748068 - 2748017
Alignment:
| Q |
406 |
agactcatgatctgggaccacatcctagaaaacattttttctgatttttatt |
457 |
Q |
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| T |
2748068 |
agactcaagatctgggaccacatcctaaaaaacaatttttttgttttttatt |
2748017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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