View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17384_low_3 (Length: 566)

Name: NF17384_low_3
Description: NF17384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17384_low_3
NF17384_low_3
[»] chr5 (25 HSPs)
chr5 (1-548)||(37869359-37869906)
chr5 (296-455)||(21144023-21144181)
chr5 (296-465)||(20355146-20355314)
chr5 (296-424)||(13153599-13153726)
chr5 (232-416)||(15399611-15399797)
chr5 (335-465)||(42778936-42779064)
chr5 (296-404)||(17668743-17668850)
chr5 (314-379)||(20628040-20628105)
chr5 (315-379)||(31567818-31567882)
chr5 (319-374)||(38082947-38083002)
chr5 (312-413)||(35687296-35687402)
chr5 (316-350)||(38083061-38083095)
chr5 (312-347)||(4561682-4561717)
chr5 (312-350)||(11721524-11721562)
chr5 (312-350)||(23159692-23159730)
chr5 (312-350)||(25919815-25919853)
chr5 (312-350)||(29691216-29691254)
chr5 (312-350)||(38874417-38874455)
chr5 (312-350)||(41123223-41123261)
chr5 (310-371)||(6527313-6527374)
chr5 (382-431)||(10819543-10819592)
chr5 (314-350)||(10819465-10819501)
chr5 (313-349)||(12147989-12148025)
chr5 (306-350)||(18232018-18232062)
chr5 (296-348)||(31567697-31567747)
[»] chr3 (30 HSPs)
chr3 (232-456)||(55257639-55257864)
chr3 (331-465)||(25124866-25125000)
chr3 (296-443)||(43426358-43426505)
chr3 (310-446)||(17582462-17582600)
chr3 (232-427)||(7308179-7308373)
chr3 (296-415)||(23070058-23070176)
chr3 (256-465)||(17030660-17030869)
chr3 (317-431)||(7013249-7013363)
chr3 (296-404)||(25159022-25159129)
chr3 (314-428)||(30226238-30226352)
chr3 (296-379)||(5303668-5303750)
chr3 (312-413)||(37050164-37050265)
chr3 (296-405)||(18359295-18359403)
chr3 (315-416)||(45008056-45008158)
chr3 (309-347)||(1347666-1347704)
chr3 (296-350)||(17030593-17030645)
chr3 (312-350)||(48689330-48689368)
chr3 (336-404)||(20275533-20275601)
chr3 (312-350)||(300425-300463)
chr3 (312-350)||(5572212-5572249)
chr3 (312-350)||(13041442-13041480)
chr3 (312-350)||(13049519-13049557)
chr3 (296-350)||(18359450-18359503)
chr3 (312-350)||(25387665-25387703)
chr3 (312-350)||(26770000-26770038)
chr3 (312-350)||(52839378-52839416)
chr3 (389-431)||(54571292-54571334)
chr3 (352-397)||(22438731-22438776)
chr3 (383-431)||(13439757-13439805)
chr3 (312-348)||(19111021-19111057)
[»] chr2 (34 HSPs)
chr2 (296-465)||(42223156-42223325)
chr2 (296-431)||(16590583-16590716)
chr2 (296-455)||(41906132-41906289)
chr2 (296-431)||(35791130-35791264)
chr2 (312-431)||(31989489-31989607)
chr2 (296-428)||(11478052-11478184)
chr2 (232-404)||(11915181-11915352)
chr2 (315-431)||(31397395-31397510)
chr2 (312-431)||(31377684-31377803)
chr2 (296-414)||(41567315-41567432)
chr2 (323-394)||(29878811-29878882)
chr2 (352-412)||(23381343-23381403)
chr2 (356-427)||(13315985-13316055)
chr2 (312-350)||(17188731-17188769)
chr2 (313-350)||(15580626-15580663)
chr2 (314-413)||(959662-959761)
chr2 (310-349)||(18155450-18155489)
chr2 (312-350)||(15543794-15543832)
chr2 (312-350)||(16139057-16139095)
chr2 (312-350)||(16204388-16204426)
chr2 (312-350)||(19272920-19272958)
chr2 (312-350)||(25293416-25293453)
chr2 (312-350)||(30497407-30497445)
chr2 (296-350)||(35791059-35791112)
chr2 (312-350)||(38128019-38128057)
chr2 (318-379)||(24486596-24486657)
chr2 (306-347)||(30602594-30602635)
chr2 (306-350)||(7007848-7007892)
chr2 (312-348)||(9419579-9419615)
chr2 (317-349)||(11915102-11915134)
chr2 (314-350)||(18756432-18756468)
chr2 (309-337)||(19612242-19612270)
chr2 (306-350)||(31989427-31989471)
chr2 (314-350)||(39373219-39373255)
[»] chr7 (36 HSPs)
chr7 (300-455)||(9689291-9689446)
chr7 (309-455)||(43393849-43393996)
chr7 (296-465)||(1853233-1853398)
chr7 (296-465)||(42957424-42957593)
chr7 (296-446)||(3092292-3092441)
chr7 (306-455)||(15635228-15635378)
chr7 (251-404)||(2936144-2936294)
chr7 (306-431)||(45687698-45687822)
chr7 (335-446)||(11625113-11625224)
chr7 (296-404)||(24812925-24813032)
chr7 (306-431)||(15011935-15012060)
chr7 (296-393)||(19377094-19377191)
chr7 (296-431)||(27082594-27082728)
chr7 (296-431)||(27195573-27195707)
chr7 (296-405)||(25601798-25601906)
chr7 (300-404)||(10394471-10394574)
chr7 (312-380)||(28696661-28696729)
chr7 (317-415)||(27484941-27485040)
chr7 (296-404)||(14675581-14675681)
chr7 (317-379)||(22859342-22859404)
chr7 (296-349)||(2936339-2936391)
chr7 (382-431)||(18268280-18268329)
chr7 (377-418)||(26876617-26876658)
chr7 (312-350)||(2300901-2300938)
chr7 (296-350)||(8391027-8391079)
chr7 (312-350)||(17051895-17051933)
chr7 (312-350)||(21022469-21022507)
chr7 (469-523)||(25583989-25584043)
chr7 (296-350)||(27484820-27484872)
chr7 (314-396)||(28543319-28543400)
chr7 (312-350)||(35158262-35158299)
chr7 (297-350)||(15011865-15011917)
chr7 (296-381)||(25898629-25898713)
chr7 (312-348)||(21521895-21521931)
chr7 (314-350)||(35158440-35158476)
chr7 (312-348)||(47370412-47370448)
[»] chr4 (32 HSPs)
chr4 (300-455)||(13555668-13555823)
chr4 (296-465)||(5283732-5283900)
chr4 (296-465)||(8810010-8810178)
chr4 (306-445)||(42161367-42161507)
chr4 (296-428)||(49277727-49277858)
chr4 (310-428)||(49533201-49533319)
chr4 (296-405)||(16875937-16876045)
chr4 (296-431)||(9780392-9780528)
chr4 (296-405)||(16734243-16734350)
chr4 (296-396)||(8678889-8678989)
chr4 (317-379)||(25786326-25786388)
chr4 (297-405)||(21744891-21744998)
chr4 (313-376)||(29172618-29172681)
chr4 (312-350)||(16589236-16589274)
chr4 (319-360)||(18509185-18509226)
chr4 (306-347)||(29172756-29172797)
chr4 (297-349)||(49277880-49277931)
chr4 (312-350)||(3652529-3652567)
chr4 (296-350)||(9780546-9780599)
chr4 (312-350)||(27626925-27626963)
chr4 (312-350)||(29104419-29104457)
chr4 (296-350)||(29700563-29700616)
chr4 (312-350)||(36395414-36395452)
chr4 (232-278)||(44005712-44005757)
chr4 (312-350)||(49166902-49166940)
chr4 (299-349)||(49533131-49533180)
chr4 (296-349)||(23091876-23091928)
chr4 (306-339)||(37589620-37589653)
chr4 (312-348)||(18510242-18510278)
chr4 (315-386)||(19376596-19376667)
chr4 (312-348)||(30919175-30919211)
chr4 (317-397)||(40920721-40920801)
[»] scaffold0004 (1 HSPs)
scaffold0004 (299-444)||(82300-82444)
[»] chr8 (31 HSPs)
chr8 (296-444)||(9235440-9235587)
chr8 (232-445)||(23288999-23289212)
chr8 (296-465)||(5600247-5600413)
chr8 (296-465)||(5640207-5640373)
chr8 (315-431)||(13373258-13373373)
chr8 (335-465)||(14698164-14698293)
chr8 (314-428)||(24375771-24375884)
chr8 (324-448)||(24528887-24529011)
chr8 (309-428)||(23245660-23245779)
chr8 (306-381)||(11908474-11908549)
chr8 (306-397)||(12719159-12719249)
chr8 (314-376)||(8980741-8980803)
chr8 (296-378)||(28786366-28786447)
chr8 (296-350)||(13980023-13980076)
chr8 (312-350)||(10761679-10761717)
chr8 (312-350)||(25653784-25653822)
chr8 (318-350)||(28786519-28786551)
chr8 (313-349)||(28999510-28999546)
chr8 (296-339)||(24754628-24754670)
chr8 (312-350)||(9662273-9662311)
chr8 (312-350)||(11830433-11830471)
chr8 (312-350)||(12478831-12478869)
chr8 (312-350)||(13558799-13558837)
chr8 (312-350)||(32684641-32684679)
chr8 (312-350)||(34845363-34845401)
chr8 (312-350)||(41509459-41509497)
chr8 (309-402)||(11311297-11311390)
chr8 (313-378)||(25057020-25057085)
chr8 (313-350)||(36637251-36637288)
chr8 (312-348)||(2873708-2873744)
chr8 (312-348)||(34227587-34227623)
[»] chr1 (33 HSPs)
chr1 (317-465)||(25059885-25060033)
chr1 (296-448)||(5469440-5469592)
chr1 (296-404)||(13437010-13437117)
chr1 (296-431)||(33864186-33864321)
chr1 (296-431)||(33916601-33916736)
chr1 (296-455)||(17890132-17890290)
chr1 (296-397)||(7261487-7261587)
chr1 (315-426)||(24023179-24023289)
chr1 (296-431)||(44078664-44078798)
chr1 (232-369)||(22315145-22315282)
chr1 (304-396)||(5882997-5883089)
chr1 (316-428)||(44228413-44228524)
chr1 (306-379)||(15654059-15654132)
chr1 (314-417)||(16639555-16639659)
chr1 (315-431)||(22151971-22152087)
chr1 (323-386)||(23621217-23621280)
chr1 (323-386)||(23737996-23738059)
chr1 (323-379)||(23652563-23652619)
chr1 (296-346)||(9240531-9240580)
chr1 (312-350)||(19967820-19967858)
chr1 (296-379)||(9240654-9240736)
chr1 (312-350)||(21770981-21771019)
chr1 (390-468)||(22315288-22315365)
chr1 (312-350)||(23161905-23161942)
chr1 (312-350)||(26190988-26191026)
chr1 (312-350)||(27666174-27666212)
chr1 (296-350)||(33864115-33864168)
chr1 (296-350)||(33916754-33916807)
chr1 (296-350)||(44228339-44228392)
chr1 (306-355)||(6667399-6667448)
chr1 (313-350)||(22387224-22387261)
chr1 (314-382)||(15657992-15658060)
chr1 (312-348)||(44961264-44961300)
[»] chr6 (21 HSPs)
chr6 (306-465)||(9044531-9044690)
chr6 (306-448)||(25167002-25167144)
chr6 (315-448)||(9662835-9662968)
chr6 (296-427)||(3816552-3816681)
chr6 (318-394)||(20757608-20757684)
chr6 (317-379)||(33198608-33198670)
chr6 (232-350)||(3816703-3816820)
chr6 (315-397)||(6759742-6759824)
chr6 (296-346)||(33200018-33200067)
chr6 (296-379)||(334912-334993)
chr6 (312-350)||(1227934-1227972)
chr6 (312-350)||(2270742-2270780)
chr6 (307-349)||(18274361-18274403)
chr6 (312-350)||(21544388-21544426)
chr6 (312-350)||(29942605-29942642)
chr6 (312-349)||(686551-686587)
chr6 (313-350)||(16119918-16119955)
chr6 (312-349)||(22495780-22495817)
chr6 (313-350)||(31174052-31174089)
chr6 (312-348)||(7321840-7321876)
chr6 (318-366)||(12655187-12655234)
[»] scaffold0067 (1 HSPs)
scaffold0067 (317-432)||(25844-25960)
[»] scaffold0188 (1 HSPs)
scaffold0188 (232-394)||(13286-13447)
[»] scaffold0003 (1 HSPs)
scaffold0003 (312-386)||(306688-306762)
[»] scaffold0110 (1 HSPs)
scaffold0110 (318-405)||(23194-23281)
[»] scaffold0142 (2 HSPs)
scaffold0142 (306-361)||(34509-34564)
scaffold0142 (357-465)||(34884-34993)
[»] scaffold1462 (1 HSPs)
scaffold1462 (312-350)||(337-375)
[»] scaffold0022 (1 HSPs)
scaffold0022 (312-350)||(63111-63149)
[»] scaffold0010 (1 HSPs)
scaffold0010 (296-350)||(145149-145201)
[»] scaffold0002 (2 HSPs)
scaffold0002 (312-350)||(432475-432513)
scaffold0002 (312-348)||(332324-332360)
[»] scaffold0121 (1 HSPs)
scaffold0121 (312-348)||(12727-12763)


Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 37869906 - 37869359
Alignment:
Q  1 aatttattacgttaacacataaacttcacaaatttcatttttaactaaaaagtaacaaannnnnnnnggtggtcgaggtctgaacctcgaactttgtctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||| ||| |||||||||||||||||||||     
T  37869906 aatttattacgttaacacataaacttcacaaatttcatttttaactaaaaagtaacaagttttttttggtggttgagatctgaacctcgaactttgtctt 37869807  T
Q  101 tatcaactgagttaaacttacgagagnnnnnnnngtaacaagtttgtttaaaggtagttttcaccaaagaaaaaa-taatataaaattacnnnnnnnnaa 199  Q
    ||||||||||| ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||        ||    
T  37869806 tatcaactgagctaaacttacgagagaaaaaaa-gtaacaagtttgtttaaaggtagttttcaccaaagaaaaaaataatataaaattacttttttttaa 37869708  T
Q  200 aggaccatgtaaaaggacttgatatnnnnnnngggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgt 299  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||        ||||    
T  37869707 aggaccatgtaaaaggacttgatataaaaaaagggttaatatatgtttaatctcctgtaatattaacgattttcggtttatctcctgtaaaaaaaattgt 37869608  T
Q  300 ttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagag 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37869607 ttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagag 37869508  T
Q  400 aatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgattttttaggatcaggctcttctaaagtgagcgattcac 499  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37869507 aatttctatttacctcctgccatatcatcgatatttcagtttaccccctcccatatcattgattttttaggatcaggctcttctaaagtgagcgattcac 37869408  T
Q  500 tgtagagtatgaagtgagtaatatattatcaaccattcaaccattaact 548  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37869407 cgtagagtatgaagtgagtaatatattatcaaccattcaaccattaact 37869359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 296 - 455
Target Start/End: Original strand, 21144023 - 21144181
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| | ||||||||||||||| |||||||    
T  21144023 ttgtttagatt-ccaaccctgtaatttgaagattttttgattttggaccttcatggcatcaaattacaaaatttgatgtacttttgccccttgtaatttg 21144121  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatat 455  Q
    |||||||||   ||||||| |||  ||||||||||||||| |||||||||| | ||||||    
T  21144122 agagaattttggtttaccctctgtcatatcatcgatattttagtttaccccttgccatat 21144181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 296 - 465
Target Start/End: Complemental strand, 20355314 - 20355146
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||| | ||||||||||||||| |||||||||| ||||| ||| |||||||||| ||||||||||||||| ||||||||| |||||||    
T  20355314 ttgtttagatt-ccaatcctgtaatttgaagattttttgattttgaaccttgatggcatcaaattaaaaaatttaaggtactcttgccccttgtaatttg 20355216  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 465  Q
    |  |||||||  |||||||||||| |||||||||||||||  ||||||||||| |||||| || ||||||    
T  20355215 aaggaatttcggtttaccccctgcaatatcatcgatattttggtttaccccctaccatatcatcgatttt 20355146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 296 - 424
Target Start/End: Original strand, 13153599 - 13153726
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| ||||||||||||||||||||||  || |||||||||||||||  ||||||| ||||||||||| |||||||| | ||||| |||||||    
T  13153599 ttgtttagatt-ccaaccttgtaatttgaagatttctttattttggaccttcatagcatcaaaatacaaaatttacggtactttcgtcccttgtaatttg 13153697  T
Q  396 agagaatttctatttaccccctgctatat 424  Q
    ||||||||||  |||||||||||| ||||    
T  13153698 agagaatttcggtttaccccctgccatat 13153726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 232 - 416
Target Start/End: Original strand, 15399611 - 15399797
Alignment:
Q  232 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccc-tgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattc 330  Q
    ||||||||||||||||| ||||| ||||||||| ||||||  |||||| | || |||        ||||||||||  |||||| |||||||||||||||     
T  15399611 gggttaatatatgtttactctcctgtaatattagcgatttctggtttacctccatgtaaaaaaatttgtttagatc-ccaaccctgtaatttgaagattt 15399709  T
Q  331 tttg--attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccc 416  Q
    |||   |||||||||||||||  |||||||||||||||||||||||||||| ||||||| |||||||||| |||||| ||||||||||    
T  15399710 ttttttattttggaccttcataacatcaaattacaaaatttaaggtactttcgccccttgtaatttgagataatttcgatttaccccc 15399797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 335 - 465
Target Start/End: Complemental strand, 42779064 - 42778936
Alignment:
Q  335 attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcatcgatatt 434  Q
    |||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||||||||  ||||  ||||   ||||||||||||||    
T  42779064 attttggaccttcatgacatcaaattacaaaatttaaggtactttcg-cccttgtaatttgagagaatttcggttta-tccctatcatatcatcgatatt 42778967  T
Q  435 tcagtttaccccctcccatattattgatttt 465  Q
    |||| ||||||||| |||||| |||||||||    
T  42778966 tcaggttaccccctgccatatcattgatttt 42778936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 296 - 404
Target Start/End: Complemental strand, 17668850 - 17668743
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||| ||||||| ||| ||||||||| |||||||||||||||||||| ||||||  |||||| |  ||||||||||||||||| ||||| | |||||||    
T  17668850 ttgttaagatttc-aacattgtaatttaaagattctttgattttggactttcatgatatcaaaatttaaaatttaaggtactttcgccccctgtaatttg 17668752  T
Q  396 agagaattt 404  Q
    |||||||||    
T  17668751 agagaattt 17668743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 314 - 379
Target Start/End: Original strand, 20628040 - 20628105
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 379  Q
    |||||||||||| |||||||| |||||||||||| || ||||||||||||||||||| ||||||||    
T  20628040 ttgtaatttgaaaattctttggttttggaccttcttggcatcaaattacaaaatttatggtacttt 20628105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 379
Target Start/End: Complemental strand, 31567882 - 31567818
Alignment:
Q  315 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 379  Q
    ||||||||||||||| |||| |||||||||||||||  ||||||||||||||||||  |||||||    
T  31567882 tgtaatttgaagattttttggttttggaccttcatgatatcaaattacaaaatttatagtacttt 31567818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 319 - 374
Target Start/End: Original strand, 38082947 - 38083002
Alignment:
Q  319 atttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggt 374  Q
    |||||||||||||||||||||| |||| |||  ||||||||||| |||||||||||    
T  38082947 atttgaagattctttgattttgaacctacatagcatcaaattacgaaatttaaggt 38083002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 413
Target Start/End: Original strand, 35687296 - 35687402
Alignment:
Q  312 ccttgtaatttgaagattctttgatt-----ttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttct 406  Q
    |||||||||||||||||| |||||||     ||||||||||||  |||||||||||||||||||  ||||||  ||||||   ||||||||  ||||||     
T  35687296 ccttgtaatttgaagattttttgattacattttggaccttcatagcatcaaattacaaaatttatagtacttccgcccctgtaaatttgagcaaatttcg 35687395  T
Q  407 atttacc 413  Q
    |||||||    
T  35687396 atttacc 35687402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 350
Target Start/End: Complemental strand, 38083095 - 38083061
Alignment:
Q  316 gtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||||||||||||||||||||    
T  38083095 gtaatttgaagattctttgattttggaccttcatg 38083061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 347
Target Start/End: Original strand, 4561682 - 4561717
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttc 347  Q
    |||||||||||||||||| |||||||||||||||||    
T  4561682 ccttgtaatttgaagattttttgattttggaccttc 4561717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 11721562 - 11721524
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  11721562 ccttgtaatttgaagattttttggttttggaccttcatg 11721524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 23159730 - 23159692
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  23159730 ccttgtaatttgaagattttttggttttggaccttcatg 23159692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 25919853 - 25919815
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  25919853 ccttgtaatttgaagattttttggttttggaccttcatg 25919815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 29691254 - 29691216
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  29691254 ccttgtaatttgaagattttttggttttggaccttcatg 29691216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 38874417 - 38874455
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  38874417 ccttgtaatttgaagattttttggttttggaccttcatg 38874455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 41123223 - 41123261
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  41123223 ccttgtaatttgaagattttttggttttggaccttcatg 41123261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 6527313 - 6527374
Alignment:
Q  310 aaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaa 371  Q
    |||| ||| ||||||||||| |||| |||||||  |||||| ||| ||||||||||||||||    
T  6527313 aaccctgtgatttgaagattatttggttttggattttcatgacataaaattacaaaatttaa 6527374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Original strand, 10819543 - 10819592
Alignment:
Q  382 ccccttataatttgagagaatttctatttaccccctgctatatcatcgat 431  Q
    |||||| |||||||||| |||||| ||||||||||||| ||||| |||||    
T  10819543 ccccttgtaatttgagaaaatttcgatttaccccctgccatatcttcgat 10819592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 10819465 - 10819501
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  10819465 ttgtaatttgaagattttttgattttagaccttcatg 10819501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 313 - 349
Target Start/End: Original strand, 12147989 - 12148025
Alignment:
Q  313 cttgtaatttgaagattctttgattttggaccttcat 349  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  12147989 cttgtaatttgaagattttttggttttggaccttcat 12148025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 18232062 - 18232018
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||| |||||||| ||||||||||| ||||| |||||||||    
T  18232062 ttccaaccctgtaatttaaagattctttggttttgaaccttcatg 18232018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 31567697 - 31567747
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttca 348  Q
    ||||||||||||| | |||||||||||||||||| |||| |||||||||||||    
T  31567697 ttgtttagatttc-atccttgtaatttgaagatt-tttggttttggaccttca 31567747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 232 - 456
Target Start/End: Original strand, 55257639 - 55257864
Alignment:
Q  232 gggttaatatatgtttaatctcca-gtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattc 330  Q
    |||||||||||||||||  | ||  ||||||||| |||||| ||||||| |||||||        ||||||||||| |||||| | |||||||||||||     
T  55257639 gggttaatatatgtttaccccccctgtaatattagcgatttccggtttaccccctgtaaaaaaaattgtttagatt-ccaaccctataatttgaagattt 55257737  T
Q  331 tttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttac-cccctgctatatcatcg 429  Q
    ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||  ||||| ||||||| |||||||||    
T  55257738 ttttattttggaccttcatggcatcaaattacaaaatttaaggtactttcgccccttataatttgatagaatttcagtttacacccctgccatatcatcg 55257837  T
Q  430 atatttcagtttaccccctcccatatt 456  Q
    ||||||||||||||||| | |||||||    
T  55257838 atatttcagtttaccccttgccatatt 55257864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 331 - 465
Target Start/End: Original strand, 25124866 - 25125000
Alignment:
Q  331 tttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcatcga 430  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||||| ||||||| ||||||| |||||||||  |||||||||||| ||||||||||    
T  25124866 tttgattttggaccttcatggcatcaaattataaaatttaaggtactttcgccccttgtaatttgggagaatttcagtttaccccctgccatatcatcga 25124965  T
Q  431 tatttcagtttaccccctcccatattattgatttt 465  Q
    |||||||||||||||||| |||||| || ||||||    
T  25124966 tatttcagtttacccccttccatatcatcgatttt 25125000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 296 - 443
Target Start/End: Complemental strand, 43426505 - 43426358
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| | |||| ||||||||||||||| ||||||||| |||||||||  |||||||||||||||||||||||||||||||||| | |||||||    
T  43426505 ttgtttagatt-cgaaccctgtaatttgaagattttttgattttagaccttcatagcatcaaattacaaaatttaaggtacttttgccccctgtaatttg 43426407  T
Q  396 agagaatttctattta-ccccctgctatatcatcgatatttcagtttac 443  Q
    ||||||||||  |||| |||||||| |||||||||||||||||||||||    
T  43426406 agagaatttcggtttacccccctgccatatcatcgatatttcagtttac 43426358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 310 - 446
Target Start/End: Complemental strand, 17582600 - 17582462
Alignment:
Q  310 aaccttgtaatttgaagattctttg--attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttcta 407  Q
    |||||||||||||||||||| |||   |||||||||||||||  |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||      
T  17582600 aaccttgtaatttgaagatttttttttattttggaccttcatagcatcaaattacaaaatttaaggtactttcgccccttgtaatttgagagattttcgg 17582501  T
Q  408 tttaccccctgctatatcatcgatatttcagtttacccc 446  Q
    |||||| ||||| |||| ||||||||||||||| |||||    
T  17582500 tttacctcctgccatataatcgatatttcagttaacccc 17582462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 232 - 427
Target Start/End: Complemental strand, 7308373 - 7308179
Alignment:
Q  232 gggttaatatatgtttaatctc-cagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattc 330  Q
    |||||||||||||||||| | | | ||||||||| ||||||  |||||| |||||||        ||||| ||||| |||||| | |||||||||||||     
T  7308373 gggttaatatatgtttaacccctctgtaatattagcgatttctggtttaccccctgtaaaaaaaattgttcagatt-ccaaccctataatttgaagattt 7308275  T
Q  331 tttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcat 427  Q
    ||| ||||| |||||||||| |||||||||||||||||||||||||||| ||||| | |||||||||||||||||  |||||||||||| |||||||    
T  7308274 ttttatttttgaccttcatggcatcaaattacaaaatttaaggtactttcgcccc-tgtaatttgagagaatttcggtttaccccctgccatatcat 7308179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 296 - 415
Target Start/End: Original strand, 23070058 - 23070176
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||||| ||||| ||||||| |||||| |||||||||| |||||| || |||||||||| ||||||||||||||||| ||||||| |||||||    
T  23070058 ttgtttagatttc-aacctagtaatttaaagattttttgattttgaaccttcgtgacatcaaattataaaatttaaggtactttcgccccttctaatttg 23070156  T
Q  396 agagaatttctatttacccc 415  Q
    |||||||||| |||||||||    
T  23070157 agagaatttcgatttacccc 23070176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 256 - 465
Target Start/End: Complemental strand, 17030869 - 17030660
Alignment:
Q  256 gtaatattaacgattttcggtttat-cccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattcttt-gattttggaccttcatgtca 353  Q
    ||||||||| |||||| |||||||| |||||||        |||||| |||||| |||| | |||||| |||||| ||| ||||||||||||||||| ||    
T  17030869 gtaatattagcgatttccggtttattcccctgtaaaaaactttgttttgatttc-aaccctctaatttaaagatttttttgattttggaccttcatggca 17030771  T
Q  354 tcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccat 453  Q
    ||||||||||||||||||||||||||  |||| | ||| ||||||||||||   |||||| ||||| |||||||||||||||||| ||||| |||  |||    
T  17030770 tcaaattacaaaatttaaggtactttcacccc-tgtaaattgagagaattttggtttacctcctgccatatcatcgatatttcaggttaccacctgacat 17030672  T
Q  454 attattgatttt 465  Q
    || |||||||||    
T  17030671 atcattgatttt 17030660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 317 - 431
Target Start/End: Original strand, 7013249 - 7013363
Alignment:
Q  317 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccc 416  Q
    ||||||||||||| ||||||||||||| ||||||  |||||||||||||||||||| |||||| ||||| | ||||||||||||||||  ||||||||||    
T  7013249 taatttgaagattatttgattttggactttcatggtatcaaattacaaaatttaagatactttcgccccatgtaatttgagagaatttagatttaccccc 7013348  T
Q  417 tgctatatcatcgat 431  Q
    ||| || ||||||||    
T  7013349 tgccatgtcatcgat 7013363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 296 - 404
Target Start/End: Complemental strand, 25159129 - 25159022
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| | |||||||||||||||| ||| ||||||||||||| |||||| |||||||||||||||||||||||| ||| ||| | | |||||||    
T  25159129 ttgtttagatt-ctaaccttgtaatttgaatattttttgattttggacgttcatggcatcaaattacaaaatttaaggtattttcgcctcctgtaatttg 25159031  T
Q  396 agagaattt 404  Q
    |||||||||    
T  25159030 agagaattt 25159022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 314 - 428
Target Start/End: Complemental strand, 30226352 - 30226238
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacc 413  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||  |||||| || ||||||  |||||   ||||||    
T  30226352 ttgtaatttgaagattctttgattttggaccttcatgacaacaaattacaaaatttatggtactttcaccccttgtagtttgagcaaattttagtttacc 30226253  T
Q  414 ccctgctatatcatc 428  Q
    |||||  ||||||||    
T  30226252 ccctgtcatatcatc 30226238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 379
Target Start/End: Complemental strand, 5303750 - 5303668
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 379  Q
    ||||||||||| |||||| |||||||||||||||||||| |||| |||||||||| |||||||||||| || ||||||||||||    
T  5303750 ttgtttagatt-ccaaccctgtaatttgaagattctttggttttagaccttcatgacatcaaattacagaacttaaggtacttt 5303668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 312 - 413
Target Start/End: Complemental strand, 37050265 - 37050164
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcat-gtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctattt 410  Q
    |||| ||||||||||||||||||||||||||| ||| | | |||||| ||||||||||||||||||||| ||||||| |||||||||  |||||| ||||    
T  37050265 ccttataatttgaagattctttgattttggacattctttgacatcaa-ttacaaaatttaaggtactttcgccccttgtaatttgagcaaatttcgattt 37050167  T
Q  411 acc 413  Q
    |||    
T  37050166 acc 37050164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 405
Target Start/End: Original strand, 18359295 - 18359403
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||| |||||||||||||||||||  |||| ||  | |||| |||||||||||||||||||||||||||| | ||  | |||||||    
T  18359295 ttgtttagatt-ccaaccctgtaatttgaagattctttagttttagatatacatggcatcaaattacaaaatttaaggtactttagtccgctgtaatttg 18359393  T
Q  396 agagaatttc 405  Q
    ||||||||||    
T  18359394 agagaatttc 18359403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 315 - 416
Target Start/End: Complemental strand, 45008158 - 45008056
Alignment:
Q  315 tgtaatttgaagattctttg-attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacc 413  Q
    ||||||||||||||| |||  ||||||||| ||| || |||||||||||||||||||||| ||||| ||||||| |||||||| | ||||||  ||||||    
T  45008158 tgtaatttgaagattttttttattttggacattcttggcatcaaattacaaaatttaaggaactttcgccccttgtaatttgataaaatttcggtttacc 45008059  T
Q  414 ccc 416  Q
    |||    
T  45008058 ccc 45008056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 347
Target Start/End: Original strand, 1347666 - 1347704
Alignment:
Q  309 caaccttgtaatttgaagattctttgattttggaccttc 347  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  1347666 caaccttgtaatttgaatattctttgattttggaccttc 1347704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 17030593 - 17030645
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||    
T  17030593 ttgtttagatt-ccaaccttgtaatttgaagatt-tttggttttggaccttcatg 17030645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 48689368 - 48689330
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  48689368 ccttgtaatttgaagattttttgattttggaccttcatg 48689330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 20275601 - 20275533
Alignment:
Q  336 ttttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaattt 404  Q
    ||||||||||| ||| ||||||||| |||||||||||||| |||||||   | |||||| |||||||||    
T  20275601 ttttggacctttatgacatcaaatttcaaaatttaaggtatttttgccaactgtaatttaagagaattt 20275533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 300463 - 300425
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  300463 ccttgtaatttgaagattttttggttttggaccttcatg 300425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 5572249 - 5572212
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  5572249 ccttgtaatttgaagatt-tttgattttggaccttcatg 5572212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 13041442 - 13041480
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  13041442 ccttgtaatttgaagattttttggttttggaccttcatg 13041480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 13049519 - 13049557
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  13049519 ccttgtaatttgaagattttttggttttggaccttcatg 13049557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 18359503 - 18359450
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||||| ||||||||||||| |||||||||||  ||| ||||||||||    
T  18359503 ttgtttagatttc-aaccttgtaatttaaagattctttggatttagaccttcatg 18359450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 25387665 - 25387703
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  25387665 ccttgtaatttcaagattctttgattttagaccttcatg 25387703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 26770000 - 26770038
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  26770000 ccttgtaatttgaagattttttgcttttggaccttcatg 26770038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 52839378 - 52839416
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  52839378 ccttgtaatttgaagattttttggttttggaccttcatg 52839416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 431
Target Start/End: Original strand, 54571292 - 54571334
Alignment:
Q  389 taatttgagagaatttctatttaccccctgctatatcatcgat 431  Q
    |||||||||| ||||||  ||||||||||||||||||||||||    
T  54571292 taatttgagaaaatttccgtttaccccctgctatatcatcgat 54571334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 397
Target Start/End: Original strand, 22438731 - 22438776
Alignment:
Q  352 catcaaattacaaaatttaaggtacttttgccccttataatttgag 397  Q
    |||||||||||||||||||  ||||||| ||||| |||||||||||    
T  22438731 catcaaattacaaaatttattgtactttcgccccctataatttgag 22438776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 383 - 431
Target Start/End: Original strand, 13439757 - 13439805
Alignment:
Q  383 cccttataatttgagagaatttctatttaccccctgctatatcatcgat 431  Q
    ||||| |||||||||  |||||| ||||||||||||||||||| |||||    
T  13439757 cccttgtaatttgagcaaatttcaatttaccccctgctatatcttcgat 13439805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 19111021 - 19111057
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  19111021 ccttgtaatttgaagatttttttattttggaccttca 19111057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 296 - 465
Target Start/End: Complemental strand, 42223325 - 42223156
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  42223325 ttgtttagatt-ccaaccctgtaatttgaagattttttgattttgaaccttcatggcatcaaattacaaaatttaaggtactttcgccccttgtaatttg 42223227  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttacc-ccctcccatattattgatttt 465  Q
    | ||||||||  |||||||||||  |||||||| ||||||| ||||||| |||| |||||| || ||||||    
T  42223226 aaagaatttcggtttaccccctgacatatcatcaatatttcggtttaccaccctaccatatcatcgatttt 42223156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 296 - 431
Target Start/End: Complemental strand, 16590716 - 16590583
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||| ||||| ||||| |||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||| | ||| |||||    
T  16590716 ttgtttatatttcaaacct-gtaatttgaagattatttggttttggaccttcatgacatcaaattacaaaatttaaggtactttcgcctcctat-atttg 16590619  T
Q  396 agagaatttctatttaccccctgctatatcatcgat 431  Q
    |||||||||| ||||||||||| |||||||||||||    
T  16590618 agagaatttcgatttaccccctactatatcatcgat 16590583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 296 - 455
Target Start/End: Complemental strand, 41906289 - 41906132
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||| ||||| |||||||||||||||||||| ||| |||||||||||| ||| |||||||||||||||||| ||||||||| |  |||| |||  ||    
T  41906289 ttgtttaaatttc-aaccttgtaatttgaagatttttttattttggacctttatggcatcaaattacaaaattttaggtactttcg-accttgtaacatg 41906192  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatat 455  Q
    ||||||||||  |||||||||||| ||||||| |||||||||||||||||||| ||||||    
T  41906191 agagaatttcagtttaccccctgccatatcattgatatttcagtttacccccttccatat 41906132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 296 - 431
Target Start/End: Complemental strand, 35791264 - 35791130
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||||| |||  |||||||| ||||||||||||||||  ||||||||| |||||||||||||||||||||||||||| |||| || |||||||    
T  35791264 ttgtttagatttc-aactctgtaatttaaagattctttgattttaaaccttcatgccatcaaattacaaaatttaaggtactttcgccctttgtaatttg 35791166  T
Q  396 agagaatttctatttaccccctgctatatcatcgat 431  Q
    |||| |||||  |||||||||||| |||||||||||    
T  35791165 agagtatttcggtttaccccctgccatatcatcgat 35791130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 312 - 431
Target Start/End: Complemental strand, 31989607 - 31989489
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctattta 411  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||| |||||| ||||  ||||||  ||||    
T  31989607 ccttgtaatttgaagattctttggttttggaccttcatggcatcaaattacaaaatttatggtactttcgccccctataatatgagcaaatttcagttta 31989508  T
Q  412 ccccctgctatatcatcgat 431  Q
     ||||||| |||||||||||    
T  31989507 -cccctgccatatcatcgat 31989489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 296 - 428
Target Start/End: Original strand, 11478052 - 11478184
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||||| |||| ||||||||||| |||||||| ||||||||||||||  |||||||||||||||||||||||||||| ||| ||| |||||||    
T  11478052 ttgtttagatttc-aaccctgtaatttgaaaattctttggttttggaccttcatagcatcaaattacaaaatttaaggtactttcgcctcttgtaatttg 11478150  T
Q  396 agagaatttctatttaccc-cctgctatatcatc 428  Q
     || ||||||  ||||||| ||||| ||||||||    
T  11478151 ggataatttcggtttaccctcctgccatatcatc 11478184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 232 - 404
Target Start/End: Complemental strand, 11915352 - 11915181
Alignment:
Q  232 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattct 331  Q
    |||||||||||||||||  | || ||||||||| | ||||||||||||   |||||        ||||||| ||||| |||  | ||||||||||||| |    
T  11915352 gggttaatatatgtttacccccctgtaatattagcaattttcggtttacttcctgtaaaaaatattgtttaaatttc-aactctataatttgaagatttt 11915254  T
Q  332 ttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaattt 404  Q
    ||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||| | ||||||||||||||||    
T  11915253 ttggttttggaccttcatgacatcaaattacaaaatttaaggcactttcgccccgtgtaatttgagagaattt 11915181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 315 - 431
Target Start/End: Complemental strand, 31397510 - 31397395
Alignment:
Q  315 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccc 414  Q
    ||||||||||||||| |||| ||||||||||||||| | ||||||| ||||||||| | |||||| ||||||| ||||||||| | ||||| ||||||||    
T  31397510 tgtaatttgaagattatttggttttggaccttcatgacgtcaaatttcaaaatttatgatactttcgccccttgtaatttgagcg-atttcaatttaccc 31397412  T
Q  415 cctgctatatcatcgat 431  Q
    ||||| |||| ||||||    
T  31397411 cctgccatattatcgat 31397395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 312 - 431
Target Start/End: Complemental strand, 31377803 - 31377684
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctattta 411  Q
    |||||||||||||||||| |||| ||||||||||||||| ||||| |||||||||||||  ||||||| ||| | | |||||||||  |||||   ||||    
T  31377803 ccttgtaatttgaagattatttggttttggaccttcatggcatcatattacaaaatttatagtactttcgcctcctgtaatttgagcaaattttggttta 31377704  T
Q  412 ccccctgctatatcatcgat 431  Q
     ||||||| |||||||||||    
T  31377703 acccctgccatatcatcgat 31377684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 296 - 414
Target Start/End: Original strand, 41567315 - 41567432
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||||| |||||||||||||||| ||| || ||||||||| ||| |||  |||||||| |||||||||||||||||| ||| | | |||||||    
T  41567315 ttgtttagatttc-aaccttgtaatttgaaaattattcgattttggatctttatggtatcaaatttcaaaatttaaggtactttcgcctcatgtaatttg 41567413  T
Q  396 agagaatttctatttaccc 414  Q
    || || ||| | |||||||    
T  41567414 agcgattttttgtttaccc 41567432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 323 - 394
Target Start/End: Original strand, 29878811 - 29878882
Alignment:
Q  323 gaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataattt 394  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||| |||| ||| | ||||| ||||||    
T  29878811 gaagattctttgattttggacattcatggcatcaaattacaaaatttatggtattttcgtcccttgtaattt 29878882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 412
Target Start/End: Complemental strand, 23381403 - 23381343
Alignment:
Q  352 catcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttac 412  Q
    ||||||||||||||||||| |||||||| ||||||| |||||||||  |||||| ||||||    
T  23381403 catcaaattacaaaatttatggtactttcgccccttgtaatttgagtaaatttcgatttac 23381343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 13316055 - 13315985
Alignment:
Q  356 aaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcat 427  Q
    |||||||||||||| ||||||||| |||| |  |||||||| |||||||| ||||||||||||| |||||||    
T  13316055 aaattacaaaatttcaggtactttcgcccatg-taatttgaaagaatttcgatttaccccctgccatatcat 13315985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 17188731 - 17188769
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  17188731 ccttgtaatttgaagattttttgattttggaccttcatg 17188769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 15580663 - 15580626
Alignment:
Q  313 cttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  15580663 cttgtaatttgaagattttttgattttggaccttcatg 15580626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 413
Target Start/End: Complemental strand, 959761 - 959662
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacc 413  Q
    ||||||| | |||||| ||| |||||| ||||| ||| ||| |||||  ||||||||||||||||| || ||||  ||||||||  |||||| |||||||    
T  959761 ttgtaatgtaaagattatttaattttgaacctttatgacattaaattttaaaatttaaggtactttcgctccttgaaatttgagcaaatttcaatttacc 959662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 349
Target Start/End: Complemental strand, 18155489 - 18155450
Alignment:
Q  310 aaccttgtaatttgaagattctttgattttggaccttcat 349  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  18155489 aaccttgtaattcgaagattctttggttttggaccttcat 18155450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 15543794 - 15543832
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  15543794 ccttgtaatttgaagattttttggttttggaccttcatg 15543832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 16139095 - 16139057
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  16139095 ccttgtaatttgaagattttttggttttggaccttcatg 16139057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 16204388 - 16204426
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  16204388 ccttgtaatttgaagattttttggttttggaccttcatg 16204426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 19272958 - 19272920
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  19272958 ccttgtaatttgaagattttttggttttggaccttcatg 19272920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 25293416 - 25293453
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25293416 ccttgtaatttgaagatt-tttgattttggaccttcatg 25293453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 30497445 - 30497407
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  30497445 ccttgtaatttgaagattttttggttttggaccttcatg 30497407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 35791059 - 35791112
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||| |||||| ||||||||||| ||||| || |||||||||||||||    
T  35791059 ttgtttagatt-ccaaccctgtaatttgaatattctctgtttttggaccttcatg 35791112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 38128057 - 38128019
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  38128057 ccttgtaatttgaagattttttggttttggaccttcatg 38128019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 24486596 - 24486657
Alignment:
Q  318 aatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 379  Q
    |||||||| ||| |||  |||||||| |||||| ||||||||| ||||||||||| ||||||    
T  24486596 aatttgaaaattgtttagttttggactttcatgacatcaaatttcaaaatttaagatacttt 24486657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 30602635 - 30602594
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttc 347  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  30602635 ttccaaccttgtaatttaaagattctttgcttttagaccttc 30602594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 7007848 - 7007892
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||| |||||||||||||||||| |||| |||| ||||||||||    
T  7007848 ttccatccttgtaatttgaagattttttgcttttagaccttcatg 7007892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 9419579 - 9419615
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    |||||||||||||||||| |||| |||||||||||||    
T  9419579 ccttgtaatttgaagattttttggttttggaccttca 9419615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 11915102 - 11915134
Alignment:
Q  317 taatttgaagattctttgattttggaccttcat 349  Q
    |||||||||||||||||| ||||||||||||||    
T  11915102 taatttgaagattctttggttttggaccttcat 11915134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 18756432 - 18756468
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||| |||| |||||||||||||||    
T  18756432 ttgtaatttgaagattttttggttttggaccttcatg 18756468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 309 - 337
Target Start/End: Complemental strand, 19612270 - 19612242
Alignment:
Q  309 caaccttgtaatttgaagattctttgatt 337  Q
    |||||||||||||||||||||||||||||    
T  19612270 caaccttgtaatttgaagattctttgatt 19612242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 31989427 - 31989471
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||| |||||||||||||||| |||||| |||| ||||||||||    
T  31989427 ttccatccttgtaatttgaagaatctttggttttcgaccttcatg 31989471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 39373255 - 39373219
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||| |||||||||| |||||||||    
T  39373255 ttgtaatttgaagattttttgattttgaaccttcatg 39373219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 36)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 300 - 455
Target Start/End: Original strand, 9689291 - 9689446
Alignment:
Q  300 ttagatttccaaccttgtaatttgaagattcttt-gattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgaga 398  Q
    ||||||||| |||| ||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  9689291 ttagatttc-aaccctgtaatttgaagatttttttgattttggaccttcatgacatcaaattataaaatttaaggtacttttgtcccttgtaatttgaga 9689389  T
Q  399 gaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatat 455  Q
    |||||||  |||||||||| | |||||||| ||||||| ||||||||||| ||||||    
T  9689390 gaatttcggtttaccccctaccatatcatcaatatttcggtttaccccctaccatat 9689446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 309 - 455
Target Start/End: Complemental strand, 43393996 - 43393849
Alignment:
Q  309 caaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctat 408  Q
    ||||| ||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||  ||||||||||||  |    
T  43393996 caaccctgtaatttgaagatttttttattttggaccttcatggcatcaaattacaaaatttaaggtactttcgacccttgtaacgtgagagaatttcagt 43393897  T
Q  409 ttaccccctgctatatcatcgatatttcagttta-ccccctcccatat 455  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||||    
T  43393896 ttaccccctgctataccatcgatatttcagtttatcccccttccatat 43393849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 296 - 465
Target Start/End: Complemental strand, 1853398 - 1853233
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||| | ||| |  ||||||    
T  1853398 ttgtttagatt-ccaaccttgtaatttgaagattttttgattttggaccttcatggcatcaaatttcaaaatttaaggtactttcgtcccctgaaatttg 1853300  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 465  Q
    ||||||||||   |||||||||||  ||||||||||||||| |||||||||||  ||||| || ||||||    
T  1853299 agagaatttc--gttaccccctgccttatcatcgatatttc-gtttaccccctgtcatatcatcgatttt 1853233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 296 - 465
Target Start/End: Original strand, 42957424 - 42957593
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| | |||| |||||||||||  || |||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| |||||||    
T  42957424 ttgtttagatt-ctaaccctgtaatttgaattttttttgattttggaccttcatgacatcaaattacaaaatttaaggtactttcgtcccttgtaatttg 42957522  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttac-cccctcccatattattgatttt 465  Q
    |||||||||| |||||||| |||  ||||| |||||||||||  |||| ||||| | |||| |||||||||    
T  42957523 agagaatttcgatttaccctctgtcatatcctcgatatttcatgttactcccctgctatatcattgatttt 42957593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 296 - 446
Target Start/End: Original strand, 3092292 - 3092441
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||||| ||||||||||||| |||||| |||||||||  ||||||||  |||||||||| |||||||||||||||||  |||| |||||||||    
T  3092292 ttgtttagatttc-aaccttgtaatttaaagattttttgattttaaaccttcattacatcaaattataaaatttaaggtactttcaccccctataatttg 3092390  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttacccc 446  Q
    |||||||| |  |||||||||| | ||||||| ||||||||  ||||||||    
T  3092391 agagaattacggtttacccccttccatatcattgatatttcgatttacccc 3092441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 306 - 455
Target Start/End: Complemental strand, 15635378 - 15635228
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 405  Q
    |||||||  ||||||||||||||  |||||||||| ||||| ||| ||||||||| ||||||||| |||||||| ||||| ||||| |||||||||||||    
T  15635378 ttccaactctgtaatttgaagatattttgattttgaacctttatgccatcaaatttcaaaatttatggtactttcgccccctataacttgagagaatttc 15635279  T
Q  406 tattta-ccccctgctatatcatcgatatttcagtttaccccctcccatat 455  Q
      |||| |||||| | |||||||||||||||| ||||||||| | ||||||    
T  15635278 gttttacccccctaccatatcatcgatatttcggtttaccccatgccatat 15635228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 251 - 404
Target Start/End: Original strand, 2936144 - 2936294
Alignment:
Q  251 ctccagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||| ||||||||| ||||||||||||||| ||||||         |||||||||| |||||| ||||||||||| ||| |||| |||| ||||||||||    
T  2936144 ctcctgtaatattagcgattttcggtttatgccctgtaaaaaaa--tgtttagatt-ccaaccatgtaatttgaaaattatttggttttagaccttcatg 2936240  T
Q  351 tcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaattt 404  Q
     |||||||||||||||||||||||||||| ||||| | ||||||||||||||||    
T  2936241 acatcaaattacaaaatttaaggtactttcgccccctgtaatttgagagaattt 2936294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 306 - 431
Target Start/End: Original strand, 45687698 - 45687822
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 405  Q
    |||||||| |||||||||||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||  |||| ||||||||||||||||||     
T  45687698 ttccaaccctgtaatttgaagattctttgatttag-accttcatggcatcaaattataaaatttaaggtactttcaccccctataatttgagagaatttt 45687796  T
Q  406 tatttaccccctgctatatcatcgat 431  Q
      |||| ||||||  |||||||||||    
T  45687797 ggtttatcccctgtcatatcatcgat 45687822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 335 - 446
Target Start/End: Complemental strand, 11625224 - 11625113
Alignment:
Q  335 attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcatcgatatt 434  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| ||||||| || |||| |||||||||  |||||||||| | ||||||| ||||||    
T  11625224 attttggaccttcatgacatcaaattacataatttaaggtactttcgccccttgtagtttgtgagaatttcggtttaccccctaccatatcattgatatt 11625125  T
Q  435 tcagtttacccc 446  Q
    || |||||||||    
T  11625124 tcggtttacccc 11625113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 404
Target Start/End: Complemental strand, 24813032 - 24812925
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||||| |||| |||||||||||||||||||| |||| |||||| | | ||||||||||||||||||||||||||||   ||||| |||||||    
T  24813032 ttgtttagatttc-aaccctgtaatttgaagattctttggttttagacctttaaggcatcaaattacaaaatttaaggtactttcatcccttgtaatttg 24812934  T
Q  396 agagaattt 404  Q
    | |||||||    
T  24812933 aaagaattt 24812925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 306 - 431
Target Start/End: Complemental strand, 15012060 - 15011935
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 405  Q
    |||||| | |||||||||||||||||||||||||| || |||| | ||||||||||||||||| |||||| ||||  ||    |||||||||||||||||    
T  15012060 ttccaatcctgtaatttgaagattctttgattttgaacattcacggcatcaaattacaaaattcaaggtatttttatcctcggtaatttgagagaatttc 15011961  T
Q  406 tatttaccccctgctatatcatcgat 431  Q
      ||||||| |||| |||||||||||    
T  15011960 ggtttaccctctgccatatcatcgat 15011935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 393
Target Start/End: Complemental strand, 19377191 - 19377094
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatt 393  Q
    ||||||||||| | | || ||||||||||||||  ||| |||||||||||||||| | |||||||||||||||||||||||||| ||||||| |||||    
T  19377191 ttgtttagattccaacccctgtaatttgaagatatttttattttggaccttcatggcgtcaaattacaaaatttaaggtactttcgccccttgtaatt 19377094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 431
Target Start/End: Original strand, 27082594 - 27082728
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||  ||||| |||||||||||||| |||| ||| || |||  ||||||||||||| ||||||||||||| ||||| | |||||||    
T  27082594 ttgtttagatt-ccaacactgtaacttgaagattctttggttttagacatttatgaaatcaaattacaaagtttaaggtactttcgccccctgtaatttg 27082692  T
Q  396 agagaatttctatttaccccctgctatatcatcgat 431  Q
    ||| |||||   |||||||||||| |||| ||||||    
T  27082693 agataattttggtttaccccctgccatattatcgat 27082728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 431
Target Start/End: Complemental strand, 27195707 - 27195573
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||  ||||| |||||||||||||| |||| ||| || |||  ||||||||||||| ||||||||||||| ||||| | |||||||    
T  27195707 ttgtttagatt-ccaacactgtaacttgaagattctttggttttagacatttatgaaatcaaattacaaagtttaaggtactttcgccccctgtaatttg 27195609  T
Q  396 agagaatttctatttaccccctgctatatcatcgat 431  Q
    ||| |||||   |||||||||||| |||| ||||||    
T  27195608 agataattttggtttaccccctgccatattatcgat 27195573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 296 - 405
Target Start/End: Original strand, 25601798 - 25601906
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||||||||||||||||||| ||||  ||   |||||||||  ||||||||||||||||||| ||||||| ||||| | ||||||     
T  25601798 ttgtttagatt-ccaaccttgtaatttgaagattttttggcttaaaaccttcatgatatcaaattacaaaatttaatgtactttcgccccctgtaatttt 25601896  T
Q  396 agagaatttc 405  Q
    ||||||||||    
T  25601897 agagaatttc 25601906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 300 - 404
Target Start/End: Original strand, 10394471 - 10394574
Alignment:
Q  300 ttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagag 399  Q
    ||||||||| ||| ||||||||||||||||||||| ||||| | ||||||  |||||||||| ||||||||||| ||||   ||| ||||||||||||||    
T  10394471 ttagatttc-aactttgtaatttgaagattctttggttttgtatcttcatagcatcaaattataaaatttaaggcacttccaccctttataatttgagag 10394569  T
Q  400 aattt 404  Q
    |||||    
T  10394570 aattt 10394574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 380
Target Start/End: Complemental strand, 28696729 - 28696661
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtactttt 380  Q
    ||||||||||| || |||||||||||||||||||||| | ||||||||||||||| ||| |||||||||    
T  28696729 ccttgtaattttaatattctttgattttggaccttcaagacatcaaattacaaaacttatggtactttt 28696661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 317 - 415
Target Start/End: Complemental strand, 27485040 - 27484941
Alignment:
Q  317 taatttgaagattctttg-attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacccc 415  Q
    ||||||||||||| |||  |||||||| ||||||| ||| |||||| |||||||||| ||||||| |||  |||||||||||||||||||  ||||||||    
T  27485040 taatttgaagattttttttattttggatcttcatggcattaaattaaaaaatttaagatacttttaccctctataatttgagagaatttcagtttacccc 27484941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 296 - 404
Target Start/End: Original strand, 14675581 - 14675681
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||||||| ||||||       ||  |||||||||| ||||||||||||| | |||||||    
T  14675581 ttgttaagatttc-aacattgtaatttgaagattctttgattttggactttcatg-------atatcaaaatttaaagtacttttgccccctgtaatttg 14675672  T
Q  396 agagaattt 404  Q
    |||||||||    
T  14675673 agagaattt 14675681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 22859342 - 22859404
Alignment:
Q  317 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 379  Q
    ||||||||||||| |||| ||||||| ||||||| | |||| |||||||||||| ||||||||    
T  22859342 taatttgaagattttttggttttggatcttcatggcttcaagttacaaaatttatggtacttt 22859404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 2936391 - 2936339
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcat 349  Q
    ||||||||||||| |||| |||||||||||||||||||| |||| |||||||||    
T  2936391 ttgtttagatttc-aaccatgtaatttgaagattctttggttttcgaccttcat 2936339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 382 - 431
Target Start/End: Complemental strand, 18268329 - 18268280
Alignment:
Q  382 ccccttataatttgagagaatttctatttaccccctgctatatcatcgat 431  Q
    ||||| |||||||||| |||||||  ||||||||||||||||||||||||    
T  18268329 cccctgataatttgagcgaatttcggtttaccccctgctatatcatcgat 18268280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 377 - 418
Target Start/End: Original strand, 26876617 - 26876658
Alignment:
Q  377 ttttgccccttataatttgagagaatttctatttaccccctg 418  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  26876617 ttttgccccttataatttgagaaaatttcaatttaccccctg 26876658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 2300901 - 2300938
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  2300901 ccttgtaatttgaagattc-ttgattttggaccttcatg 2300938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 8391027 - 8391079
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||| |||||| |||||||||||| ||||| ||||||||||||||||||||    
T  8391027 ttgtttag-tttccatccttgtaatttgtagatt-tttgattttggaccttcatg 8391079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 17051895 - 17051933
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  17051895 ccttgtaatttgaatattttttgattttggaccttcatg 17051933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 21022469 - 21022507
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  21022469 ccttgtaatttgaagattttttggttttggaccttcatg 21022507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 523
Target Start/End: Original strand, 25583989 - 25584043
Alignment:
Q  469 ggatcaggctcttctaaagtgagcgattcactgtagagtatgaagtgagtaatat 523  Q
    ||||| |||||||||||||||||| | ||||| |||||| | |||||||||||||    
T  25583989 ggatccggctcttctaaagtgagcaactcactttagagtgtaaagtgagtaatat 25584043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 27484820 - 27484872
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||| |||||||    
T  27484820 ttgtttagatttc-aaccatgtaatttgaagatt-tttgattttggatcttcatg 27484872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 314 - 396
Target Start/End: Complemental strand, 28543400 - 28543319
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttga 396  Q
    ||||||||||||  | ||||| ||||||||||  | | |||||||||||||||||||  ||||||||| || |||||||||||    
T  28543400 ttgtaatttgaaagtcctttggttttggacctgaa-gacatcaaattacaaaatttatagtacttttgtcctttataatttga 28543319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 35158262 - 35158299
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  35158262 ccttgtaatttgaagatt-tttgattttggaccttcatg 35158299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 15011865 - 15011917
Alignment:
Q  297 tgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||| |||| |||||||||||||||||||| ||||| |||| ||||    
T  15011865 tgtttagatttc-aaccctgtaatttgaagattctttggttttgaacctgcatg 15011917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 381
Target Start/End: Complemental strand, 25898713 - 25898629
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttg 381  Q
    ||||||||||||  ||||||||||||||||||||||| ||||||  |||   |||  |||||||| |||| |||||| ||||||||    
T  25898713 ttgtttagatttt-aaccttgtaatttgaagattcttcgattttaaacccatatgatatcaaatttcaaactttaagatacttttg 25898629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 21521895 - 21521931
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    |||||||||||||||||| |||| |||||||||||||    
T  21521895 ccttgtaatttgaagattttttggttttggaccttca 21521931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 35158476 - 35158440
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||| |||| |||||||||||||||    
T  35158476 ttgtaatttgaagattttttggttttggaccttcatg 35158440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 47370448 - 47370412
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  47370448 ccttgtaatttaaagattttttgattttggaccttca 47370412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 300 - 455
Target Start/End: Original strand, 13555668 - 13555823
Alignment:
Q  300 ttagatttccaaccttgtaatttgaagattcttt-gattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgaga 398  Q
    ||||||||| |||| ||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  13555668 ttagatttc-aaccctgtaatttgaagatttttttgattttggaccttcatgacatcaaattataaaatttaaggtacttttgtcccttgtaatttgaga 13555766  T
Q  399 gaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatat 455  Q
    |||||||  |||||||||| | |||||||| ||||||| ||||||||||| ||||||    
T  13555767 gaatttcggtttaccccctaccatatcatcaatatttcggtttaccccctaccatat 13555823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 296 - 465
Target Start/End: Complemental strand, 5283900 - 5283732
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||| | ||||||||||||||| |||||||||| ||||||||| |||||||||| ||||||||||||||| ||||||||| |||||||    
T  5283900 ttgtttagatt-ccaatcctgtaatttgaagattttttgattttgaaccttcatggcatcaaattaaaaaatttaaggtactcttgccccttgtaatttg 5283802  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 465  Q
    |  |||||||  |||||||||||| ||||||||||||||||  ||||||| || |||||| || ||||||    
T  5283801 aaggaatttcggtttaccccctgcaatatcatcgatatttcgatttaccctctaccatatcatcgatttt 5283732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 296 - 465
Target Start/End: Complemental strand, 8810178 - 8810010
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||| ||||||| |||||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||||||| | ||| | |||||||    
T  8810178 ttgttaagatttc-aaccttgtaatttgaagatttttttattttggaccttcatgacatcaaattataaaatttaaggtactttcgtcccgtgtaatttg 8810080  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 465  Q
    ||| ||||||  ||||||||||   || ||||||||||||||| |||||||||  ||||| |||||||||    
T  8810079 agaaaatttcggtttaccccctatcatgtcatcgatatttcaggttaccccctgtcatatcattgatttt 8810010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 306 - 445
Target Start/End: Complemental strand, 42161507 - 42161367
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 405  Q
    |||||| | ||||||||||||||  ||| |||||||||||| | | |||||||||||||||||||||||||||| || |||| |||||||||||||||||    
T  42161507 ttccaatcctgtaatttgaagatcttttaattttggaccttgaaggcatcaaattacaaaatttaaggtactttcgctccttgtaatttgagagaatttc 42161408  T
Q  406 tatttaccc-cctgctatatcatcgatatttcagtttaccc 445  Q
     |||||||| ||||| |||||||||||||||||||||||||    
T  42161407 gatttaccctcctgccatatcatcgatatttcagtttaccc 42161367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 296 - 428
Target Start/End: Original strand, 49277727 - 49277858
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||| ||||||||||| ||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||  | |||||||    
T  49277727 ttgtttagatt-ccaaccgtgtaatttgaaaattatttggttttggaccttcatggcatcaaattacaaaatttaaggtacttttgccctctgtaatttg 49277825  T
Q  396 agagaatttctatttaccccctgctatatcatc 428  Q
     ||||||||| ||||||||||||| ||||||||    
T  49277826 cgagaatttcaatttaccccctgcgatatcatc 49277858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 310 - 428
Target Start/End: Complemental strand, 49533319 - 49533201
Alignment:
Q  310 aaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatt 409  Q
    |||||| ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |||    
T  49533319 aaccttataatttgaagattatttggttttggaccttcatgacatcaaattacaaaatttaacgtatttttgccccttataatttgagagaatttcgatt 49533220  T
Q  410 taccccctgctatatcatc 428  Q
    || || || ||||||||||    
T  49533219 tatcctctcctatatcatc 49533201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 296 - 405
Target Start/End: Original strand, 16875937 - 16876045
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| | ||||||||| |||||||||||||||||||| |||||| ||| |||||||||||||||||||||||| ||||| ||| | |||||||    
T  16875937 ttgtttagattac-aaccttgtagtttgaagattctttgattttcgacctttatggcatcaaattacaaaatttaaggtatttttgtcccctgtaatttg 16876035  T
Q  396 agagaatttc 405  Q
    ||||||||||    
T  16876036 agagaatttc 16876045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 296 - 431
Target Start/End: Original strand, 9780392 - 9780528
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||| ||||||||||||||||||||||||| ||||| |||| |||||||||| |||||||||||||||||   ||| | |||||||    
T  9780392 ttgtttagatt-ccaaccctgtaatttgaagattctttgattttcgacctacatggcatcaaattaaaaaatttaaggtactttcatcccctgtaatttg 9780490  T
Q  396 agagaatttctatttacccc--ctgctatatcatcgat 431  Q
    ||| ||||||  ||||||||  |||| |||||||||||    
T  9780491 agataatttcggtttaccccttctgccatatcatcgat 9780528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 296 - 405
Target Start/End: Complemental strand, 16734350 - 16734243
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||||||| ||| || || | |||||||    
T  16734350 ttgtttagatttc-aacct-gtaatttgaagattctttgattttagaccttcatggcataaaattacaaaatttaaggtattttcgcaccctgtaatttg 16734253  T
Q  396 agagaatttc 405  Q
    ||||||||||    
T  16734252 agagaatttc 16734243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 296 - 396
Target Start/End: Original strand, 8678889 - 8678989
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttg-attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataattt 394  Q
    ||||||||||| | |||||||||||||||||||| |||  |||||||||||||||| |||||||||||||||||||||||||||| ||| ||| ||||||    
T  8678889 ttgtttagatt-caaaccttgtaatttgaagattttttttattttggaccttcatggcatcaaattacaaaatttaaggtactttcgcctcttgtaattt 8678987  T
Q  395 ga 396  Q
    ||    
T  8678988 ga 8678989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 317 - 379
Target Start/End: Complemental strand, 25786388 - 25786326
Alignment:
Q  317 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 379  Q
    |||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  25786388 taatttgaagattctttgattttgaaccttcatggcatcaaattacaaattttaaggtacttt 25786326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 405
Target Start/End: Complemental strand, 21744998 - 21744891
Alignment:
Q  297 tgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttga 396  Q
    |||||||||| |||||| ||||||||||| |||||||| |||||||  |||||| | | |||||||||||||| |||| |||| ||  ||| ||||||||    
T  21744998 tgtttagatt-ccaaccatgtaatttgaatattctttggttttggattttcatgacgtgaaattacaaaattttaggtgctttcgcttcttgtaatttga 21744900  T
Q  397 gagaatttc 405  Q
    |||||||||    
T  21744899 gagaatttc 21744891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 313 - 376
Target Start/End: Original strand, 29172618 - 29172681
Alignment:
Q  313 cttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtac 376  Q
    ||||||||||| ||||| ||| |||||||||||| ||| |||||| || |||||||||||||||    
T  29172618 cttgtaatttggagatttttttattttggaccttaatggcatcaagtttcaaaatttaaggtac 29172681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 16589274 - 16589236
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  16589274 ccttgtaatttgaagattttttgattttggaccttcatg 16589236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 319 - 360
Target Start/End: Complemental strand, 18509226 - 18509185
Alignment:
Q  319 atttgaagattctttgattttggaccttcatgtcatcaaatt 360  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  18509226 atttgaagattctttgattttggatcttcatgacatcaaatt 18509185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 29172797 - 29172756
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttc 347  Q
    ||||||||||||||||||||||||||||| ||||| ||||||    
T  29172797 ttccaaccttgtaatttgaagattctttggttttgaaccttc 29172756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 49277931 - 49277880
Alignment:
Q  297 tgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcat 349  Q
    |||||||||| |||||||||||||||||||||| |||| ||||| ||||||||    
T  49277931 tgtttagatt-ccaaccttgtaatttgaagattatttggttttgaaccttcat 49277880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 3652567 - 3652529
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  3652567 ccttgtaatttgaagattttttggttttggaccttcatg 3652529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 9780599 - 9780546
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||| | |||| ||||||||||||||| |||| |||||||||||||||    
T  9780599 ttgtttagattac-aaccatgtaatttgaagattatttggttttggaccttcatg 9780546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 27626963 - 27626925
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  27626963 ccttgtaatttgaagattttttgcttttggaccttcatg 27626925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 29104457 - 29104419
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  29104457 ccttgtaatttgaagattttttggttttggaccttcatg 29104419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 29700563 - 29700616
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||| |||||| ||| ||||||||||||||| ||||| ||||||||||    
T  29700563 ttgtttagatt-ccaaccctgttatttgaagattctttaatttttgaccttcatg 29700616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 36395414 - 36395452
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  36395414 ccttgtaatttgaagattttttggttttggaccttcatg 36395452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 232 - 278
Target Start/End: Original strand, 44005712 - 44005757
Alignment:
Q  232 gggttaatatatgtttaatctccagtaatattaacgattttcggttt 278  Q
    |||||||| |||||||| ||||||||||||||| |||||||||||||    
T  44005712 gggttaatgtatgttta-tctccagtaatattagcgattttcggttt 44005757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 49166940 - 49166902
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  49166940 ccttgtaatttgaagattttttggttttggaccttcatg 49166902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 49533131 - 49533180
Alignment:
Q  299 tttagatttccaaccttgtaatttgaagattctttgattttggaccttcat 349  Q
    |||||||||| |||||||||||||||||||| ||| ||||||||| |||||    
T  49533131 tttagatttc-aaccttgtaatttgaagattttttcattttggactttcat 49533180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 23091928 - 23091876
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcat 349  Q
    ||||||||||| |||||||||||||||||||||| |||  ||||| ||||||||    
T  23091928 ttgtttagatt-ccaaccttgtaatttgaagattttttagttttgaaccttcat 23091876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 339
Target Start/End: Complemental strand, 37589653 - 37589620
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgatttt 339  Q
    |||||||| |||||||||||||||||||||||||    
T  37589653 ttccaaccatgtaatttgaagattctttgatttt 37589620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 18510278 - 18510242
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    |||||||||||||||||| |||| |||||||||||||    
T  18510278 ccttgtaatttgaagattttttggttttggaccttca 18510242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 315 - 386
Target Start/End: Complemental strand, 19376667 - 19376596
Alignment:
Q  315 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatt-taaggtacttttgcccct 386  Q
    ||||||||||||||| ||||||||| ||| |  ||| ||||||| |||||||||  |||||||||||||||||    
T  19376667 tgtaatttgaagattatttgattttagacttcaatgacatcaaa-tacaaaattaaaaggtacttttgcccct 19376596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 30919211 - 30919175
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    |||||||||||||||||| |||| |||||||||||||    
T  30919211 ccttgtaatttgaagattttttggttttggaccttca 30919175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 397
Target Start/End: Original strand, 40920721 - 40920801
Alignment:
Q  317 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgag 397  Q
    ||||||||| ||||||| ||||||||| ||  ||  |||||||| |||||||||||||  |||| |||  |||||||||||    
T  40920721 taatttgaatattctttaattttggacttttttgatatcaaatttcaaaatttaaggtgattttacccactataatttgag 40920801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 86; Significance: 8e-41; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 299 - 444
Target Start/End: Complemental strand, 82444 - 82300
Alignment:
Q  299 tttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgaga 398  Q
    |||||||||| | |||| |||||| |||||| ||||||||||||||||||||  ||||||||||||||||||||||||||| ||||| | ||||||||||    
T  82444 tttagatttcaaccctt-taatttaaagattgtttgattttggaccttcatgatatcaaattacaaaatttaaggtactttcgccccatgtaatttgaga 82346  T
Q  399 gaatttctatttaccccctgctatatcatcgatatttcagtttacc 444  Q
    |||||||  ||||||||||||||||||||||||||||  |||||||    
T  82345 gaatttcggtttaccccctgctatatcatcgatattttggtttacc 82300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 296 - 444
Target Start/End: Complemental strand, 9235587 - 9235440
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  9235587 ttgtttagatttc-aaccctgtaatttgaagattttttgattttggaccttcatggcatcaaattacaaaatttaaggtactttcgccccttgtaatttg 9235489  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttacc 444  Q
    | |||||||   |||| ||| ||  |||||||||||||||| |||||||    
T  9235488 aaagaattttggtttaacccttgacatatcatcgatatttcggtttacc 9235440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 232 - 445
Target Start/End: Complemental strand, 23289212 - 23288999
Alignment:
Q  232 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattct 331  Q
    ||||||||||||||||   | || |||||||||  |||||||||||||||||||||        ||||||||||| |||||| ||||||||||||||| |    
T  23289212 gggttaatatatgtttg--cccctgtaatattagtgattttcggtttatcccctgtaaaaaaaattgtttagatt-ccaaccctgtaatttgaagatttt 23289116  T
Q  332 ttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctattta---ccccctgctatatcatc 428  Q
    || | |||||||||||||| |||||||||||||||||||||||||||| | ||| | |||||||||||||||||| ||||   |||||||  ||||||||    
T  23289115 ttaactttggaccttcatggcatcaaattacaaaatttaaggtactttcgtcccctgtaatttgagagaatttctgtttaatcccccctgtcatatcatc 23289016  T
Q  429 gatatttcagtttaccc 445  Q
    |||||||| ||| ||||    
T  23289015 gatatttcggttcaccc 23288999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 296 - 465
Target Start/End: Complemental strand, 5600413 - 5600247
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||| ||||| |||||||||||||||||||| ||| |||||  | ||||||| |||||| |||||||||| |||||||||| ||||| ||||||||     
T  5600413 ttgtttaaatttc-aaccttgtaatttgaagatttttttattttaaatcttcatggcatcaagttacaaaattgaaggtactttcgcccc-tataatttt 5600316  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 465  Q
    ||||||||||   || |||||||||||||||| |||| |||||||||||| || ||||||||| ||||||    
T  5600315 agagaatttcggatt-ccccctgctatatcattgatagttcagtttaccctctgccatattatcgatttt 5600247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 296 - 465
Target Start/End: Original strand, 5640207 - 5640373
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||| ||||| |||||||||||||||||||| ||| |||||  | ||||||| |||||| |||||||||| |||||||||| ||||| ||||||||     
T  5640207 ttgtttaaatttc-aaccttgtaatttgaagatttttttattttaaatcttcatggcatcaagttacaaaattgaaggtactttcgcccc-tataatttt 5640304  T
Q  396 agagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 465  Q
    ||||||||||   || |||||||||||||||| |||| |||||||||||| || ||||||||| ||||||    
T  5640305 agagaatttcggatt-ccccctgctatatcattgatagttcagtttaccctctgccatattatcgatttt 5640373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 13373258 - 13373373
Alignment:
Q  315 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccc 414  Q
    |||||||||||||||||||| ||||| |||||| || |||||||||||||||||||||||| ||||||||||| ||||||||||||||| |  | || ||    
T  13373258 tgtaatttgaagattctttggttttgaaccttcctggcatcaaattacaaaatttaaggtatttttgccccttgtaatttgagagaattccggtgta-cc 13373356  T
Q  415 cctgctatatcatcgat 431  Q
    |||||||||||||||||    
T  13373357 cctgctatatcatcgat 13373373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 335 - 465
Target Start/End: Complemental strand, 14698293 - 14698164
Alignment:
Q  335 attttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctatatcatcgatatt 434  Q
    ||||| |||||||||| |||||| ||| ||||||||||||||||||| || || |||||||||| ||||||  ||| |||||||| ||||||||||||||    
T  14698293 attttagaccttcatggcatcaa-ttataaaatttaaggtacttttgtcctttgtaatttgagaaaatttcagtttgccccctgccatatcatcgatatt 14698195  T
Q  435 tcagtttaccccctcccatattattgatttt 465  Q
    |||| ||||||| | |||||| |||||||||    
T  14698194 tcaggttaccccttgccatatcattgatttt 14698164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 314 - 428
Target Start/End: Original strand, 24375771 - 24375884
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacc 413  Q
    |||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |||||||| | ||||| |||||||||  ||||||  ||||||    
T  24375771 ttgtaatttgaagattttttg-ttttggaccttcatggcatcaaattacaaaatttatggtactttcgtcccttgtaatttgagcaaatttcagtttacc 24375869  T
Q  414 ccctgctatatcatc 428  Q
    |||||| ||||||||    
T  24375870 ccctgccatatcatc 24375884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 324 - 448
Target Start/End: Complemental strand, 24529011 - 24528887
Alignment:
Q  324 aagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccctgctata 423  Q
    |||||| ||| |||||| |||||| || |||||||||| ||||||||| ||| ||| |||| || |||||| ||||||| ||  |||||||||| | |||    
T  24529011 aagatttttttattttgtaccttcgtggcatcaaattataaaatttaaagtattttcgccctttgtaattttagagaatctcggtttaccccctaccata 24528912  T
Q  424 tcatcgatatttcagtttaccccct 448  Q
    |||||||||||||||||||||||||    
T  24528911 tcatcgatatttcagtttaccccct 24528887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 309 - 428
Target Start/End: Complemental strand, 23245779 - 23245660
Alignment:
Q  309 caaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctat 408  Q
    ||||| ||||||||||||||| |||||||||||||||  ||| ||| |||||  ||||||||||||||||| ||||| | |||||||||| ||||||  |    
T  23245779 caaccctgtaatttgaagattttttgattttggacctatatggcattaaattttaaaatttaaggtactttcgccccatgtaatttgagataatttcgtt 23245680  T
Q  409 ttaccccctgctatatcatc 428  Q
    ||||||| ||| ||||||||    
T  23245679 ttaccccttgccatatcatc 23245660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 306 - 381
Target Start/End: Original strand, 11908474 - 11908549
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttg 381  Q
    |||||||| ||||||||||||||||| || ||| ||||||||||| ||||||||| ||||||||||||||||||||    
T  11908474 ttccaaccatgtaatttgaagattctatggtttaggaccttcatggcatcaaatttcaaaatttaaggtacttttg 11908549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 306 - 397
Target Start/End: Original strand, 12719159 - 12719249
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgag 397  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||| | | |||||| ||||||| |||||||||    
T  12719159 ttccatccttgtaatttgaa-attctttggttttggaccttcatgacatcaaatttcaaaattgatgatactttcgccccttgtaatttgag 12719249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 314 - 376
Target Start/End: Complemental strand, 8980803 - 8980741
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtac 376  Q
    ||||||||||||||||||||  ||||||||||||||| ||||||||||||||||||| |||||    
T  8980803 ttgtaatttgaagattctttagttttggaccttcatgacatcaaattacaaaatttatggtac 8980741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 296 - 378
Target Start/End: Original strand, 28786366 - 28786447
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtactt 378  Q
    ||||||||||| |||||| ||||| | ||||||| |||||||||||||||||||| |||||| || |||| ||||||||||||    
T  28786366 ttgtttagatt-ccaaccctgtaactagaagattatttgattttggaccttcatggcatcaattttcaaactttaaggtactt 28786447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 13980076 - 13980023
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||||||||||    
T  13980076 ttgtttagatt-ctaaccctgtaatttgaagattctttgattttggaccttcatg 13980023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 10761717 - 10761679
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  10761717 ccttgtaatttgaagattttttgattttggaccttcatg 10761679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 25653784 - 25653822
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  25653784 ccttgtaatttgaagattttttgattttggaccttcatg 25653822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 318 - 350
Target Start/End: Complemental strand, 28786551 - 28786519
Alignment:
Q  318 aatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||||||||||||||||||    
T  28786551 aatttgaagattctttgattttggaccttcatg 28786519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 349
Target Start/End: Complemental strand, 28999546 - 28999510
Alignment:
Q  313 cttgtaatttgaagattctttgattttggaccttcat 349  Q
    |||||||||||||||||||||||||| ||||||||||    
T  28999546 cttgtaatttgaagattctttgatttgggaccttcat 28999510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 24754628 - 24754670
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgatttt 339  Q
    ||||||||||| |||||| |||||||||||||||||||||||||    
T  24754628 ttgtttagatt-ccaaccatgtaatttgaagattctttgatttt 24754670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 9662273 - 9662311
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  9662273 ccttgtaatttgaagattttttggttttggaccttcatg 9662311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 11830471 - 11830433
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  11830471 ccttgtaatttgaagattttttggttttggaccttcatg 11830433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 12478869 - 12478831
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  12478869 ccttgtaatttgaagattttttggttttggaccttcatg 12478831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 13558837 - 13558799
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  13558837 ccttgtaatttgaagattttttggttttggaccttcatg 13558799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 32684641 - 32684679
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  32684641 ccttgtaatttgaagattttttggttttggaccttcatg 32684679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 34845363 - 34845401
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  34845363 ccttgtaatttgaagattttttggttttggaccttcatg 34845401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 41509459 - 41509497
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  41509459 ccttgtaatttgaagattttttggttttggaccttcatg 41509497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 402
Target Start/End: Original strand, 11311297 - 11311390
Alignment:
Q  309 caaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaat 402  Q
    |||| |||||||||||||||| | |||||||| |  |||||| ||||  |||  ||||||||| ||| ||||| ||||| ||||||||| ||||    
T  11311297 caactttgtaatttgaagattatatgattttgaattttcatgacatcgtatttaaaaatttaacgtatttttgtcccttgtaatttgagggaat 11311390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 378
Target Start/End: Original strand, 25057020 - 25057085
Alignment:
Q  313 cttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtactt 378  Q
    |||||||||||||||||||||  ||||| | ||||||  ||||||||| |||||| |||| |||||    
T  25057020 cttgtaatttgaagattctttagttttgaatcttcatcacatcaaatttcaaaatgtaagatactt 25057085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 36637288 - 36637251
Alignment:
Q  313 cttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  36637288 cttgtaatatgaagattttttgattttggaccttcatg 36637251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 2873744 - 2873708
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    |||||||||||||||||| |||| |||||||||||||    
T  2873744 ccttgtaatttgaagattttttggttttggaccttca 2873708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 34227623 - 34227587
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    |||||||||||||||||| |||| |||||||||||||    
T  34227623 ccttgtaatttgaagattttttggttttggaccttca 34227587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 3e-40; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 317 - 465
Target Start/End: Original strand, 25059885 - 25060033
Alignment:
Q  317 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccccc 416  Q
    |||||| || ||| |||||||||||||||||| | |||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||  |||||||||    
T  25059885 taatttaaatattttttgattttggaccttcaagacatcaaattacaaaatttaaggtattttcgccccttgtaatttgagagcatttcggtttaccccc 25059984  T
Q  417 tgctatatcatcgatatttcagtttaccccctcccatattattgatttt 465  Q
    ||  |||||||||||||||||| ||||||||| |||||| |||||||||    
T  25059985 tgtcatatcatcgatatttcaggttaccccctgccatatcattgatttt 25060033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 296 - 448
Target Start/End: Complemental strand, 5469592 - 5469440
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| ||||||||||||||||||  || |||||||||||||||||||| ||||||| |||||||||||||||| ||||||||| | |||| ||    
T  5469592 ttgtttagatt-ccaaccttgtaatttgaattttttttgattttggaccttcatggcatcaaactacaaaatttaaggtatttttgccccctgtaatatg 5469494  T
Q  396 agagaatttctattta-ccccctgctatatcatcgatatttcagtttaccccct 448  Q
    ||||||||||  |||| |||||| ||||||||| ||||||||| |||| |||||    
T  5469493 agagaatttcggtttacccccctactatatcattgatatttcaatttatcccct 5469440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 296 - 404
Target Start/End: Complemental strand, 13437117 - 13437010
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||| |||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||    
T  13437117 ttgtttagatt-ccaaccgtgtaatttgatgattttttgattttggaccttcatgacatcaaattacaaaatttaaggtactttcgccccttgtaatttg 13437019  T
Q  396 agagaattt 404  Q
    |||||||||    
T  13437018 agagaattt 13437010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 296 - 431
Target Start/End: Complemental strand, 33864321 - 33864186
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||| ||| | | ||||||     
T  33864321 ttgtttagatt-ccaaccctgtaatttgaagattctttggttttggacctttatggcatcaaattacaaaatttaaggtattttcgcctcctgtaatttt 33864223  T
Q  396 agagaatttctatttacccc-ctgctatatcatcgat 431  Q
     |||||||||  |||||||| |||| |||||||||||    
T  33864222 cgagaatttcggtttacccctctgcgatatcatcgat 33864186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 296 - 431
Target Start/End: Original strand, 33916601 - 33916736
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| ||| ||| | | ||||||     
T  33916601 ttgtttagatt-ccaaccctgtaatttgaagattctttggttttggacctttatggcatcaaattacaaaatttaaggtattttcgcctcctgtaatttt 33916699  T
Q  396 agagaatttctatttacccc-ctgctatatcatcgat 431  Q
     |||||||||  |||||||| |||| |||||||||||    
T  33916700 cgagaatttcggtttacccctctgcgatatcatcgat 33916736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 296 - 455
Target Start/End: Original strand, 17890132 - 17890290
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||| |||||||| |||||| ||| |||||||| | ||||  |||||||||||||||||||||||||||  | || || |||||||    
T  17890132 ttgtttagatt-ccaaccctgtaatttaaagatttttt-attttggatcctcatagcatcaaattacaaaatttaaggtacttccgtccattgtaatttg 17890229  T
Q  396 agagaatttctatttacc-ccctgctatatcatcgatatttcagtttaccccctcccatat 455  Q
    ||||||||||  |||||| |  ||  |||||||||||||||||||||||||| | ||||||    
T  17890230 agagaatttcggtttacctctatgtcatatcatcgatatttcagtttaccccttgccatat 17890290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 296 - 397
Target Start/End: Complemental strand, 7261587 - 7261487
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||| ||||||||||| |||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||  |||| | |||||||    
T  7261587 ttgtttagatt-ccaaccctgtaatttgaacattctttggttttggaccttcatgacatcaaatttcaaaattgaaggtactttgcccccctgtaatttg 7261489  T
Q  396 ag 397  Q
    ||    
T  7261488 ag 7261487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 426
Target Start/End: Complemental strand, 24023289 - 24023179
Alignment:
Q  315 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccc 414  Q
    |||||||| |||||| |||| ||||||||||||| | |||||||||  ||||||||||||| ||||||||||| || |||||| ||||||| ||||| ||    
T  24023289 tgtaattt-aagattatttggttttggaccttcacgacatcaaatttgaaaatttaaggtatttttgccccttttattttgagcgaatttcgatttatcc 24023191  T
Q  415 cctgctatatca 426  Q
    ||| ||||||||    
T  24023190 cctactatatca 24023179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 296 - 431
Target Start/End: Complemental strand, 44078798 - 44078664
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| ||||||||||||||||||||| ||||  |||||||||||| |  ||| ||||| |||||||||||||||||||||||| ||||  |||    
T  44078798 ttgtttagatt-ccaaccttgtaatttgaagatccttttgttttggaccttcctaacataaaatttcaaaatttaaggtacttttgccccctatagattg 44078700  T
Q  396 agagaatttctatttaccccctgctatatcatcgat 431  Q
    ||  |||||   | |||||||||  |||||||||||    
T  44078699 agcaaattttggtataccccctgtaatatcatcgat 44078664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 232 - 369
Target Start/End: Original strand, 22315145 - 22315282
Alignment:
Q  232 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccctgtnnnnnnnn-ttgtttagatttccaaccttgtaatttgaagattc 330  Q
    ||||||||||||||||| || || ||||||||| ||||||  ||||||  ||||||         ||||||||||| |||||| |||||||||||||||     
T  22315145 gggttaatatatgtttactcccctgtaatattagcgatttctggtttactccctgtaaaaaaaaattgtttagatt-ccaaccctgtaatttgaagattt 22315243  T
Q  331 tttgattttggaccttcatgtcatcaaattacaaaattt 369  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  22315244 tttgattttggaccttcatggcatcatattacaaaattt 22315282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 304 - 396
Target Start/End: Complemental strand, 5883089 - 5882997
Alignment:
Q  304 atttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttga 396  Q
    |||| |||||||||||||| |||||| ||||  |||| ||||||||| |||||||||  ||||||||||||||||| |||||| |||||||||    
T  5883089 attttcaaccttgtaattttaagattatttggctttgtaccttcatgacatcaaattttaaaatttaaggtactttcgcccctcataatttga 5882997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 316 - 428
Target Start/End: Complemental strand, 44228524 - 44228413
Alignment:
Q  316 gtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacccc 415  Q
    |||||||||||||||||||  ||||||||||| || ||||||||| |||||||||||||||||| ||||| | |||||| ||  ||||||  ||||||||    
T  44228524 gtaatttgaagattctttgggtttggaccttcgtggcatcaaatttcaaaatttaaggtactttcgcccc-tgtaatttaagcaaatttcggtttacccc 44228426  T
Q  416 ctgctatatcatc 428  Q
    |||  ||||||||    
T  44228425 ctggcatatcatc 44228413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 306 - 379
Target Start/End: Original strand, 15654059 - 15654132
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 379  Q
    ||||||| |||||||||||| |||||||||||||| ||||||  | ||||||||| ||||| ||||||||||||    
T  15654059 ttccaactttgtaatttgaaaattctttgattttgaaccttctggacatcaaatttcaaaacttaaggtacttt 15654132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 314 - 417
Target Start/End: Original strand, 16639555 - 16639659
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgcccc-ttataatttgagagaatttctatttac 412  Q
    ||||||||| ||||||||||| |||| |||||| |||   ||||||||||||||||| |||||||| ||||| || |||||||||| |||||   |||||    
T  16639555 ttgtaatttaaagattctttggtttttgacctttatgatgtcaaattacaaaatttatggtactttcgcccctttgtaatttgagaaaattttggtttac 16639654  T
Q  413 cccct 417  Q
    |||||    
T  16639655 cccct 16639659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 315 - 431
Target Start/End: Original strand, 22151971 - 22152087
Alignment:
Q  315 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccc 414  Q
    ||||||||||||||| |||  ||||||||||||||| ||||||||| ||||||||| |||||||  ||||  | |||||| ||  ||||||  |||||||    
T  22151971 tgtaatttgaagatttttttgttttggaccttcatgacatcaaattgcaaaatttatggtacttacgcccactgtaatttaagcaaatttcagtttaccc 22152070  T
Q  415 cctgctatatcatcgat 431  Q
     || | |||||||||||    
T  22152071 tctaccatatcatcgat 22152087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 23621217 - 23621280
Alignment:
Q  323 gaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgcccct 386  Q
    ||||||||||||| ||||||| |||||| ||||||||| |||||||||| ||||||| ||||||    
T  23621217 gaagattctttgagtttggactttcatgacatcaaatttcaaaatttaaagtactttcgcccct 23621280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 323 - 386
Target Start/End: Original strand, 23737996 - 23738059
Alignment:
Q  323 gaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgcccct 386  Q
    ||||||||||||| ||||||| |||||| ||||||||| |||||||||| ||||||| ||||||    
T  23737996 gaagattctttgagtttggactttcatgacatcaaatttcaaaatttaaagtactttcgcccct 23738059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 379
Target Start/End: Original strand, 23652563 - 23652619
Alignment:
Q  323 gaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 379  Q
    ||||||||||||| ||||||| |||||| ||||||||| |||||||||| |||||||    
T  23652563 gaagattctttgagtttggactttcatgacatcaaatttcaaaatttaaagtacttt 23652619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 9240531 - 9240580
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggacctt 346  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  9240531 ttgtttagatttg-aaccctgtaatttgaagattctttgattttggacctt 9240580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 19967858 - 19967820
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  19967858 ccttgtaatttgaagattttttgattttggaccttcatg 19967820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 379
Target Start/End: Complemental strand, 9240736 - 9240654
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 379  Q
    ||||||||||| | |||| ||||| ||||||||||||   ||||  ||||||||| ||||||||||  ||||||||||||||||    
T  9240736 ttgtttagatt-caaaccctgtaacttgaagattcttcagttttaaaccttcatggcatcaaattatgaaatttaaggtacttt 9240654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 21771019 - 21770981
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  21771019 ccttgtaatttgaagattttttggttttggaccttcatg 21770981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 468
Target Start/End: Original strand, 22315288 - 22315365
Alignment:
Q  390 aatttgagagaatttctatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttttta 468  Q
    ||||||||| ||||||  |||||||||| | ||||||||||||||||||  || |||||  ||||| ||||||||||||    
T  22315288 aatttgagaaaatttcagtttacccccttccatatcatcgatatttcagggta-cccctgtcatatcattgatttttta 22315365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 23161905 - 23161942
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  23161905 ccttgtaatttgaagatt-tttgattttggaccttcatg 23161942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 26191026 - 26190988
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  26191026 ccttataatttgaagattttttgattttggaccttcatg 26190988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 27666212 - 27666174
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  27666212 ccttgtaatttgaagattttttggttttggaccttcatg 27666174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 33864115 - 33864168
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||| | |||||||    
T  33864115 ttgtttagatt-ccaaccctgtaatttgaagattctttggttttgaatcttcatg 33864168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 33916807 - 33916754
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||| |||||| |||||||||||||||||||| ||||| | |||||||    
T  33916807 ttgtttagatt-ccaaccctgtaatttgaagattctttggttttgaatcttcatg 33916754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Original strand, 44228339 - 44228392
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||| | |||| |||||||| ||||||||||| |||||||||||||||    
T  44228339 ttgtttagattac-aaccctgtaatttaaagattctttggttttggaccttcatg 44228392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 355
Target Start/End: Original strand, 6667399 - 6667448
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatc 355  Q
    |||||||||||||||||||||||| ||| ||||| |||| | ||||||||    
T  6667399 ttccaaccttgtaatttgaagattatttcattttagaccctgatgtcatc 6667448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 22387224 - 22387261
Alignment:
Q  313 cttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  22387224 cttgtaatttgaagattttttggttttggaccttcatg 22387261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 382
Target Start/End: Original strand, 15657992 - 15658060
Alignment:
Q  314 ttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgc 382  Q
    ||||||| ||||||||||||| ||||| |||| | || ||| ||||| ||||| |||||||||| ||||    
T  15657992 ttgtaatctgaagattctttggttttgaacctccgtgacattaaatttcaaaacttaaggtactcttgc 15658060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 44961300 - 44961264
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    |||||||||||||||||| |||| |||||||||||||    
T  44961300 ccttgtaatttgaagattttttggttttggaccttca 44961264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 306 - 465
Target Start/End: Complemental strand, 9044690 - 9044531
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 405  Q
    |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| | |||||||| ||||||  || |   ||||||||||||||||     
T  9044690 ttccaaccttgtaatttgaagattatttgattttggaccttcatggcatcaaattatataatttaagatactttcacctcccgtaatttgagagaatttt 9044591  T
Q  406 tatttaccccctgctatatcatcgatatttcagtttaccccctcccatattattgatttt 465  Q
      |||||||||||| |||||||||||||||||||||||||| | |||||| || ||||||    
T  9044590 ggtttaccccctgccatatcatcgatatttcagtttaccccttgccatatcatcgatttt 9044531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 306 - 448
Target Start/End: Complemental strand, 25167144 - 25167002
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 405  Q
    |||||||  ||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||||||||    
T  25167144 ttccaactgtgtaatttgaagattatttgattttggatcttcatggcatcaaattacaaaatttaaggtactttcgtcccttgtaatttgagagaatttc 25167045  T
Q  406 tatttaccccctgctatatcatcgatatttcagtttaccccct 448  Q
      |||||| || || |||  |||||||||||||||||||||||    
T  25167044 ggtttacctcccgccataggatcgatatttcagtttaccccct 25167002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 315 - 448
Target Start/End: Complemental strand, 9662968 - 9662835
Alignment:
Q  315 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttaccc 414  Q
    ||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||  |||||||    
T  9662968 tgtaatttgaagattttttgattttgaaccttcatgacatcaaattacaaaatttaaggtacttttgccccctgtaatttgagagaatttcagtttaccc 9662869  T
Q  415 cctgctatatcatcgatatttcagtttaccccct 448  Q
    | ||  ||||||| |||||||  |||||||||||    
T  9662868 cttgtcatatcattgatattttggtttaccccct 9662835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 296 - 427
Target Start/End: Original strand, 3816552 - 3816681
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttg 395  Q
    ||||||||||| |||||||  |||||| ||||||||||| ||||| | ||||||| |||||||||| ||||||||||||||||| ||||| | |||||||    
T  3816552 ttgtttagatt-ccaaccta-taatttaaagattctttggttttgaatcttcatggcatcaaattataaaatttaaggtactttcgccccctgtaatttg 3816649  T
Q  396 agagaatttctatttaccccctgctatatcat 427  Q
    ||| |||||   |||||| |||||||||||||    
T  3816650 agaaaattttggtttacctcctgctatatcat 3816681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 20757684 - 20757608
Alignment:
Q  318 aatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataattt 394  Q
    |||||||||||| |||| |||||| | |||||| ||||||||||||||| |||||||||||| ||||||| ||||||    
T  20757684 aatttgaagattttttggttttggtcgttcatgacatcaaattacaaaacttaaggtactttcgccccttgtaattt 20757608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 317 - 379
Target Start/End: Original strand, 33198608 - 33198670
Alignment:
Q  317 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 379  Q
    |||||||||||||||||| |||| ||| |||||| |||||||||||||||||||||| |||||    
T  33198608 taatttgaagattctttggttttagacattcatggcatcaaattacaaaatttaaggcacttt 33198670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 232 - 350
Target Start/End: Complemental strand, 3816820 - 3816703
Alignment:
Q  232 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattct 331  Q
    ||||||||| |||||||  |||  ||||||||| ||||||  |||||| |||||||        ||||||||||||| |||| |||||||||||||||||    
T  3816820 gggttaatacatgtttatcctcatgtaatattagcgatttctggtttaccccctgtaaaaaaaattgtttagatttc-aaccctgtaatttgaagattct 3816722  T
Q  332 ttgattttggaccttcatg 350  Q
    ||| |||| ||||||||||    
T  3816721 ttggtttttgaccttcatg 3816703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 397
Target Start/End: Original strand, 6759742 - 6759824
Alignment:
Q  315 tgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgag 397  Q
    |||||||||| ||||||||  |||||||  ||||||  |||||||| ||||||||||||||||||  |||| | |||||||||    
T  6759742 tgtaatttgatgattctttagttttggattttcatgagatcaaatttcaaaatttaaggtactttcaccccctttaatttgag 6759824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 33200067 - 33200018
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggacctt 346  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||||||    
T  33200067 ttgtttagattac-aaccctgtaatttgaagattctttgattttggacctt 33200018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 379
Target Start/End: Original strand, 334912 - 334993
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttt 379  Q
    ||||||||||||  |||||||||||||||||||| |||  ||| |||| |||||| ||| |||||| ||||||||| |||||||    
T  334912 ttgtttagatttt-aaccttgtaatttgaagatt-tttagtttaggacattcatgacattaaattataaaatttaaagtacttt 334993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 1227972 - 1227934
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  1227972 ccttgtaatttgaagattttttggttttggaccttcatg 1227934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 2270780 - 2270742
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  2270780 ccttgtaatttgaagattttttggttttggaccttcatg 2270742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 18274403 - 18274361
Alignment:
Q  307 tccaaccttgtaatttgaagattctttgattttggaccttcat 349  Q
    ||||||| |||||||||||||||||||||||||| || |||||    
T  18274403 tccaaccctgtaatttgaagattctttgattttgaactttcat 18274361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 21544426 - 21544388
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  21544426 ccttgtaatttgaagattttttggttttggaccttcatg 21544388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 29942605 - 29942642
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  29942605 ccttgtaatttgaagatt-tttgattttggaccttcatg 29942642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 686587 - 686551
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcat 349  Q
    |||||||||||||||||| |||||||||||||||||||    
T  686587 ccttgtaatttgaagatt-tttgattttggaccttcat 686551  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 16119955 - 16119918
Alignment:
Q  313 cttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  16119955 cttgtaatttgaagattttttggttttggaccttcatg 16119918  T

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Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 22495780 - 22495817
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcat 349  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  22495780 ccttgtaatttgaagattttttggttttggaccttcat 22495817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 31174052 - 31174089
Alignment:
Q  313 cttgtaatttgaagattctttgattttggaccttcatg 350  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  31174052 cttgtaatttgaagattttttgattttagaccttcatg 31174089  T

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Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 7321840 - 7321876
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    |||||||||||||||||| |||| |||||||||||||    
T  7321840 ccttgtaatttgaagattttttggttttggaccttca 7321876  T

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Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 318 - 366
Target Start/End: Original strand, 12655187 - 12655234
Alignment:
Q  318 aatttgaagattctttgattttggaccttcatgtcatcaaattacaaaa 366  Q
    |||||||||||| |||| |||| |||||||||| |||||||||||||||    
T  12655187 aatttgaagattatttggttttagaccttcatg-catcaaattacaaaa 12655234  T

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Target: scaffold0067 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 317 - 432
Target Start/End: Complemental strand, 25960 - 25844
Alignment:
Q  317 taatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacc-cc 415  Q
    |||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||  |||||| ||    
T  25960 taatttgaaggttttttgattttggaccttcatggcatcaaattacaaaatttaaggtactttcgccccttgtaatttgagagaatttcggtttaccacc 25861  T
Q  416 ctgctatatcatcgata 432  Q
    |||  ||||||||||||    
T  25860 ctgtcatatcatcgata 25844  T

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Target: scaffold0188 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 232 - 394
Target Start/End: Complemental strand, 13447 - 13286
Alignment:
Q  232 gggttaatatatgtttaatctccagtaatattaacgattttcggtttatcccctgtnnnnnnnnttgtttagatttccaaccttgtaatttgaagattct 331  Q
    |||||||||||||||||  | || ||||||||| ||||||| |||||| |||||||        ||||||||||| |||||||||||||||||||||| |    
T  13447 gggttaatatatgtttaccc-cctgtaatattagcgatttttggtttaccccctgtaaaaaaatttgtttagatt-ccaaccttgtaatttgaagatttt 13350  T
Q  332 tt-gattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataattt 394  Q
    || ||||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||||||    
T  13349 tttgattttggaccttcatgacatcaaattacaaaatttaaggtactttcgccccatgtaattt 13286  T

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Target: scaffold0003 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 312 - 386
Target Start/End: Complemental strand, 306762 - 306688
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgcccct 386  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||    
T  306762 ccttgtaatttgaagattctttggttttggaccttcatggcatcaaattacaaaatttatggtactttcgcccct 306688  T

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Target: scaffold0110 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 318 - 405
Target Start/End: Original strand, 23194 - 23281
Alignment:
Q  318 aatttgaagattctttgattttggaccttcatgtcatcaaattacaaaatttaaggtacttttgccccttataatttgagagaatttc 405  Q
    |||||||||| | ||||||||| |||||||||| |||||||||||||||||||| ||| ||  ||||  |||||||||||||||||||    
T  23194 aatttgaagactttttgattttagaccttcatggcatcaaattacaaaatttaacgtatttccgccctctataatttgagagaatttc 23281  T

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Target: scaffold0142 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 306 - 361
Target Start/End: Original strand, 34509 - 34564
Alignment:
Q  306 ttccaaccttgtaatttgaagattctttgattttggaccttcatgtcatcaaatta 361  Q
    ||||||||||||||||| |||||| |||||| ||||||||||||| ||||||||||    
T  34509 ttccaaccttgtaattttaagattttttgatcttggaccttcatggcatcaaatta 34564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 465
Target Start/End: Original strand, 34884 - 34993
Alignment:
Q  357 aattacaaaatttaaggtacttttgccccttataatttgagagaatttctatttacccc-ctgctatatcatcgatatttcagtttaccccctcccatat 455  Q
    ||||| |||||||||||||||||  |||| | ||||||||||| ||||   |||||||| |||  ||||||| ||||||||||||||||||||  |||||    
T  34884 aattaaaaaatttaaggtactttctccccatgtaatttgagagtattttggtttacccctctgtcatatcatagatatttcagtttaccccctatcatat 34983  T
Q  456 tattgatttt 465  Q
     || ||||||    
T  34984 catcgatttt 34993  T

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Target: scaffold1462 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold1462
Description:

Target: scaffold1462; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 375 - 337
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  375 ccttgtaatttgaagattttttggttttggaccttcatg 337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 63111 - 63149
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  63111 ccttgtaatttgaagattttttggttttggaccttcatg 63149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 350
Target Start/End: Complemental strand, 145201 - 145149
Alignment:
Q  296 ttgtttagatttccaaccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||    
T  145201 ttgtttag-tttccatccttataatttgaagatt-tttgattttggaccttcatg 145149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 432475 - 432513
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttcatg 350  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  432475 ccttgtaatttgaagattttttggttttggaccttcatg 432513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 332360 - 332324
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    |||||||||||||||||| |||| |||||||||||||    
T  332360 ccttgtaatttgaagattttttggttttggaccttca 332324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 12763 - 12727
Alignment:
Q  312 ccttgtaatttgaagattctttgattttggaccttca 348  Q
    |||||||||||||||||| |||| |||||||||||||    
T  12763 ccttgtaatttgaagattttttggttttggaccttca 12727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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