View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17384_low_4 (Length: 450)
Name: NF17384_low_4
Description: NF17384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17384_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 27 - 429
Target Start/End: Complemental strand, 19451819 - 19451417
Alignment:
| Q |
27 |
gctctgaatgtcatttcagaaatgccgattaaaccagatgctgtaatttggaggagtcttttagatgcttgttataagcaacatgcaagtattgagctaa |
126 |
Q |
| |
|
||||| ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
19451819 |
gctctcaatgtggtttcggaaatgccgattaaaccagatgctgtaatttggaggagtcttttagatgcttgttataagcaacatgcaagtgttgagctaa |
19451720 |
T |
|
| Q |
127 |
gtgaagaaatggcaaagcaagtttttgagtcaaacgggagtgtttgtggtggtgcttatgttcttttgtcgaaagtgtatgcttcagctagtaggtggaa |
226 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19451719 |
gtgaagaaatggcaaagcaaatttttgagtcaaacgggagtgtttgtggtggtgcttatgttcttttgtcgaaagtgtatgcttcagctagtagatggaa |
19451620 |
T |
|
| Q |
227 |
tgatgtagggttgcttcgtaagctaatgaatgataagggtgtgagtaaagagcctggttgtagtttaatagagataaatggtgctgctcatgaatttttt |
326 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19451619 |
tgatgtagggttgcttagaaagctaatgaatgataagggtgtgagtaaaaagcctggttgtagtttaatagagataaacggtgctgctcatgaatttttt |
19451520 |
T |
|
| Q |
327 |
gccggagataccaatcatccacaaagtaaagagatatacaagttcatgaatgaaattcaggagaaactagaatctgtagggtatttacctgattattcag |
426 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19451519 |
gccggagacaccaatcatccacaaagtaaagatatatacaagttcatgaatgaaattcaggagaaactagaatctgtagggtatttacctgattattcag |
19451420 |
T |
|
| Q |
427 |
gag |
429 |
Q |
| |
|
||| |
|
|
| T |
19451419 |
gag |
19451417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University