View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17384_low_9 (Length: 246)
Name: NF17384_low_9
Description: NF17384
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17384_low_9 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 12104737 - 12104965
Alignment:
| Q |
18 |
aaagaatgatccctcatcttccttattctatccttacttgtgaaaccctagttgttcttaagctcagttttctcaatatgggtaaggagtttaatattac |
117 |
Q |
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| T |
12104737 |
aaagaatgatccctcatcttccttattctatccttacttgtgaaaccctagttgttcttaagcttagttttctcaatatgggtaaggagtttaatattac |
12104836 |
T |
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| Q |
118 |
tctcgtaacattaccctcactcaaaaccctacatttgaaatacattcgctttcaacaaggcgatgatcttattttccttacagataattgtctaaatctt |
217 |
Q |
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| T |
12104837 |
tctcgtaacattaccctcactcaaaaccctacatttgaaatacattcgctttcaacaaggcgatgatcttattttccttacagataattgtccaaatctt |
12104936 |
T |
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| Q |
218 |
gaagatcttctactatttgatataaccta |
246 |
Q |
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| T |
12104937 |
gaagatcttctactatttgatataaccta |
12104965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 12094394 - 12094470
Alignment:
| Q |
18 |
aaagaatgatccctcatcttccttattctatccttacttgtgaaaccctagttgttcttaagctcagttttctcaat |
94 |
Q |
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| T |
12094394 |
aaagaatgatccctcatctgccttattctatccttacttgtgcaaccctcgttgttcttaagctcggttttctcaat |
12094470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 163
Target Start/End: Complemental strand, 1446488 - 1446370
Alignment:
| Q |
45 |
ctatccttacttgtgaaaccctagttgttcttaagctcagttttctcaatatgggtaagg-agtttaatattactctcgtaacattaccctcactcaaaa |
143 |
Q |
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| T |
1446488 |
ctattcttacttgtacaacccttgttgttcttaagctcagttatctttatatgggtccggcattttgttatta-tcccataatattaccttcactcaaaa |
1446390 |
T |
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| Q |
144 |
ccctacatttgaaatacatt |
163 |
Q |
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| T |
1446389 |
ccctacatttgaaagacatt |
1446370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 163
Target Start/End: Complemental strand, 1459818 - 1459773
Alignment:
| Q |
118 |
tctcgtaacattaccctcactcaaaaccctacatttgaaatacatt |
163 |
Q |
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| T |
1459818 |
tctcataagattaccctcactcaaaaccctacatctgaaagacatt |
1459773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 157
Target Start/End: Complemental strand, 45810998 - 45810966
Alignment:
| Q |
125 |
acattaccctcactcaaaaccctacatttgaaa |
157 |
Q |
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| T |
45810998 |
acattaccttcactcaaaaccctacatttgaaa |
45810966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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