View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17385_high_1 (Length: 834)

Name: NF17385_high_1
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17385_high_1
NF17385_high_1
[»] chr8 (1 HSPs)
chr8 (18-818)||(25840436-25841237)


Alignment Details
Target: chr8 (Bit Score: 750; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 750; E-Value: 0
Query Start/End: Original strand, 18 - 818
Target Start/End: Original strand, 25840436 - 25841237
Alignment:
Q  18 actttgtcaagttgcattgtgattccaaatatatccaatgttgataaaaaatatttaactttaattataattatctacaaataatgataaatgattcgtg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25840436 actttgtcaagttgcattgtgattccaaatatatccaatgttgataaaaaatatttaactttaattataattatctacaaataatgataaatgattcgtg 25840535  T
Q  118 attggtagattttgatggtgcatcaaaatattgaccatggtnnnnnnnn-tcttcacaagcatgtaaaaacttaaaaacgcacctgcaacattgaattct 216  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25840536 attggtagattttgatggtgcatcaaaatattgaccatggtaaaaaaaaatcttcacaagcatgtaaaaacttaaaaacgcacctgcaacattgaattct 25840635  T
Q  217 tacgactcttcaaggaagaccgagacttcatagaagaaaccaattcagaatcattaacctcatcacgagaatcaaatgaagaaatagaagcaaaactaat 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25840636 tacgactcttcaaggaagaccgagacttcatagaagaaaccaattcagaatcattaacctcatcacgagaatcaaatgaagaaatagaagcaaaactaat 25840735  T
Q  317 ttgattcaacaattcaacattctcctgattagccaatgataactccacaaactctacaccccaaagaatccaattatgtgtagcagaggtaggatcatca 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25840736 ttgattcaacaattcaacattctcctgattagccaatgataactccacaaactctacaccccaaagaatccaattatgtgtagcagaggtaggatcatca 25840835  T
Q  417 tgtgtaatagaatttctccatggtggtgttccaccattacctctcaaatattttccacaccaacttctcagtttcacgttgaacccttcttttattggtt 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  25840836 tgtgtaatagaatttctccatggtggtgttccaccattacctctcaaatattttccacaccaactcctcagtttcacgttgaacccttcttttattggtt 25840935  T
Q  517 cccattcatatttccagcccaaacccgcgtcgtaatcggcttggacaactttgtttccggtcatgccgaggagaaatggcgtgtctgtcgcggttaggta 616  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  25840936 cccattcatatttccagcccaaacccgcgtcgtaatcggcttggacaactttgtttccggtcatgccgaggagaaatggcgtgtccgtcgcggttaggta 25841035  T
Q  617 acggccgtggtggctcctgaggcgtatatggtgaggttttgtttcgaccggttcgattaaccatagtgattttttggttgttccatttctgctctgacgg 716  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25841036 acggccatggtggctcctgaggcgtatatggtgaggttttgtttcgaccggttcgataaaccatagtgattttttggttgttccatttctgctctgacgg 25841135  T
Q  717 atgttgttgttgtcttcatctgctactaggtacttccctaggtggctgcgtagtttcacagcctttgatttgttgaaatactccattttactaattgtgt 816  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25841136 atgttgttgttgtcttcatctgctactaggtacttccctaggtggctgcgtagtttcacagcctttgatttgttgaaatactccattttactagttgtgt 25841235  T
Q  817 tg 818  Q
    ||    
T  25841236 tg 25841237  T

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