View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_high_15 (Length: 476)
Name: NF17385_high_15
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 455
Target Start/End: Complemental strand, 14164213 - 14163777
Alignment:
| Q |
19 |
aaaaatctagtcacatatctaaattttactggtagtgatcaagttgtttactactttaaattattactgatctagatgataaagtcctagttagaataag |
118 |
Q |
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| T |
14164213 |
aaaaatctaatcacatatctaaattttagaggtagtgatcaagttgtttactactttaaattattattgatctagatgataaagtcctagttagaataag |
14164114 |
T |
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| Q |
119 |
atgtcaattgttctagcgacccatatgcaagcttttattcagtttcggcacattacgtatagtaccgtgcgttgacattaaagtatagttgggtagtaat |
218 |
Q |
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| T |
14164113 |
atgtcgattgttctagcaacccatatgcaagcttttattcagtttcggcacattacgtatagtaccgtgcgttgacattaaaatatagttgggtagtaat |
14164014 |
T |
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| Q |
219 |
agtagtaggaacttatgagtaagaagagacaagatatggatgtaagtaagaagagacaaaattagacaaattatgcaaattccagatggacccatagcct |
318 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14164013 |
agtagtaggaacttacgagtaagaagagacaaaatatggatggaagtaagaagagacaaaattagacaaattatgcaaattccagatggacccatagcct |
14163914 |
T |
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| Q |
319 |
atgttactaatcactactatgaatcaattaattaggctaaaaatgagtacgtggtaacatgaacatactccttatataagtacatatgaatatgatgatc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14163913 |
atgttactaatcactactatgaatcaattaattaggctaaaaatgagtacgtggtaacatgaacatactccttatataagtacatatgaatatgatgatc |
14163814 |
T |
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| Q |
419 |
atgaagtcatggaaagctctatgtataggatagttag |
455 |
Q |
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| T |
14163813 |
atgaagtcatggaaagctctatgtataggatagttag |
14163777 |
T |
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