View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17385_high_16 (Length: 470)

Name: NF17385_high_16
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17385_high_16
NF17385_high_16
[»] chr5 (18 HSPs)
chr5 (13-452)||(40283119-40283558)
chr5 (14-219)||(40332959-40333164)
chr5 (14-258)||(40386237-40386481)
chr5 (13-219)||(40375991-40376197)
chr5 (349-451)||(40311103-40311205)
chr5 (349-452)||(40326383-40326486)
chr5 (342-444)||(40303490-40303592)
chr5 (55-193)||(40598559-40598697)
chr5 (358-451)||(40362323-40362416)
chr5 (350-451)||(40409057-40409158)
chr5 (55-167)||(40276849-40276961)
chr5 (341-449)||(40333946-40334054)
chr5 (349-446)||(40256990-40257087)
chr5 (350-451)||(40406348-40406449)
chr5 (286-335)||(40597781-40597830)
chr5 (341-449)||(40387224-40387332)
chr5 (340-448)||(40597647-40597755)
chr5 (358-451)||(40457394-40457487)


Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 13 - 452
Target Start/End: Original strand, 40283119 - 40283558
Alignment:
Q  13 agcaaaggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaa 112  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283119 agcaaaggctatatgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaa 40283218  T
Q  113 aggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatga 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283219 aggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatga 40283318  T
Q  213 atttaatgaattatatgaaaaaataaaggcactaaatgggaaatgtgaagggttacctgaaaaaattataaaggtgggatcttccttcggaagtaaacca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283319 atttaatgaattatatgaaaaaataaaggcactaaatgggaaatgtgaagggttacctgaaaaaattataaaggtgggatcttccttcggaagtaaacca 40283418  T
Q  313 attgaggaatggaaagtatcacttggtaaatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctt 412  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283419 attgaggaatggaaagcatcacttgctaaatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctt 40283518  T
Q  413 tgtgccgggaggggttcaagaccttcatggatgatgagga 452  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  40283519 tgtgccgggaggggttcaagaccttcatggatgatgagga 40283558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 40332959 - 40333164
Alignment:
Q  14 gcaaaggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaa 113  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  40332959 gcaaaggctacatgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgtgcgtgcaaaagttgaagcaattgatcgtaaaactgaaaa 40333058  T
Q  114 ggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatgaa 213  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||| ||| ||||||||||||||| | ||||||||||||| |||||||||| ||||    
T  40333059 ggttagagatgttgtgtttgagtggctaaaagaagcagacataatcatgcaaaaaatggagaatcttaaattacaatcaaaaccaccatcatggattgaa 40333158  T
Q  214 tttaat 219  Q
    ||||||    
T  40333159 tttaat 40333164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 14 - 258
Target Start/End: Original strand, 40386237 - 40386481
Alignment:
Q  14 gcaaaggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaa 113  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||  |||||||||||||    
T  40386237 gcaaaggctatatgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgtgcgtgcacaagttgaagcaattgacagtaaaactgaaaa 40386336  T
Q  114 ggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatgaa 213  Q
    |||||||||||||||||||||||||||||||||| |||| ||  |||| ||| ||||||||||||||| | ||||||||||||| |||||||||| ||||    
T  40386337 ggttagagatgttgtgtttgagtggctaaaagaagcagaaatagtcatgcaaaaaatggagaatcttaaattacaatcaaaaccaccatcatggattgaa 40386436  T
Q  214 tttaatgaattatatgaaaaaataaaggcactaaatgggaaatgt 258  Q
    |||||| ||||  | |||||||| |  |||||||||  |||||||    
T  40386437 tttaataaattgcaggaaaaaattacagcactaaataagaaatgt 40386481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 219
Target Start/End: Original strand, 40375991 - 40376197
Alignment:
Q  13 agcaaaggctatacgaaagttgaaagacaaaagaagaaactcatttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaa 112  Q
    ||||||||||||| ||||||||||||||||||||| ||||||  ||||||||| ||||||| || ||||||||||||||||||||||  |||||||||||    
T  40375991 agcaaaggctatatgaaagttgaaagacaaaagaacaaactctattcaaatcgcgatcgtgtgcatgcaaaagttgaagcaattgatcctaaaactgaaa 40376090  T
Q  113 aggttagagatgttgtgtttgagtggctaaaagaaacagacatgatcatacaagaaatggagaatcttacaatacaatcaaaaccgccatcatggaatga 212  Q
    |||| ||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||| || ||||||||||||| |||||||||| |||    
T  40376091 aggtcagagatgttgtgtttgagtggctaaaaaaaacagacataatcatacaagaagtggagaatcttgcagtacaatcaaaaccaccatcatggattga 40376190  T
Q  213 atttaat 219  Q
    |||||||    
T  40376191 atttaat 40376197  T

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Target: chr5; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 349 - 451
Target Start/End: Original strand, 40311103 - 40311205
Alignment:
Q  349 attttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatg 448  Q
    |||||| |||||||||||||  ||||||||||| | |||||||| |||||||||||||||||| | |||||||| |||||||||||||||||||||||||    
T  40311103 attttcatcagttttagaggaaaagatactcgtgactcttttacgggttttctctatgatgctctatgccgggaagggttcaagaccttcatggatgatg 40311202  T
Q  449 agg 451  Q
    |||    
T  40311203 agg 40311205  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 349 - 452
Target Start/End: Original strand, 40326383 - 40326486
Alignment:
Q  349 attttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatg 448  Q
    ||||| || ||||||| ||| |||||||||||  | ||||| ||||||||||||||| ||  | |||| || ||||||||||||||||||||||||||||    
T  40326383 atttttctaagttttaaaggagaagatactcgctactctttcacaggttttctctataatattctgtgtcgagaggggttcaagaccttcatggatgatg 40326482  T
Q  449 agga 452  Q
    ||||    
T  40326483 agga 40326486  T

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Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 444
Target Start/End: Original strand, 40303490 - 40303592
Alignment:
Q  342 atggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatg 441  Q
    ||||||||||||| ||||||||||||| |||||||||||  | |||||||| |||||||||||||||||| | || || || || ||||| || ||||||    
T  40303490 atggcagattttcatcagttttagaggagaagatactcggtactcttttacgggttttctctatgatgctctctgtcgagaaggattcaaaacattcatg 40303589  T
Q  442 gat 444  Q
    |||    
T  40303590 gat 40303592  T

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Target: chr5; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 55 - 193
Target Start/End: Complemental strand, 40598697 - 40598559
Alignment:
Q  55 atttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaaacagaca 154  Q
    ||||||||||| |||| || ||| | |||||||||||||| ||||   |||||||||||||| |  |||| ||||||||||||||||||||||||||| |    
T  40598697 atttcaaatcgagatcttgtgcgcgtaaaagttgaagcaactgatcacaaaactgaaaaggtcaacgatgctgtgtttgagtggctaaaagaaacagata 40598598  T
Q  155 tgatcatacaagaaatggagaatcttacaatacaatcaa 193  Q
    |  |||| |||||  | || ||||| ||| |||||||||    
T  40598597 tactcatgcaagaggttgaaaatctgacactacaatcaa 40598559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 451
Target Start/End: Original strand, 40362323 - 40362416
Alignment:
Q  358 agttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatgagg 451  Q
    |||||| | ||||||||||||||  | || ||||| || || |||||| |||||||||| || ||||| ||||||| |||||||||||||||||    
T  40362323 agtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgtgtcgtgagggattcaagatcttcatggatgatgagg 40362416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 350 - 451
Target Start/End: Original strand, 40409057 - 40409158
Alignment:
Q  350 ttttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatga 449  Q
    |||| ||||||||| | ||||||||||||||  | ||||||||||| ||||||||| ||| |||| | |  ||||| ||||| | |||||||||||||||    
T  40409057 tttttctcagtttttgcggggaagatactcgctactcttttacaggatttctctatcatgatttgcgtcatgagggattcaaaatcttcatggatgatga 40409156  T
Q  450 gg 451  Q
    ||    
T  40409157 gg 40409158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 167
Target Start/End: Original strand, 40276849 - 40276961
Alignment:
Q  55 atttcaaatcgtgatcgtgcgcgtgcaaaagttgaagcaattgattgtaaaactgaaaaggttagagatgttgtgtttgagtggctaaaagaaacagaca 154  Q
    ||||||||||||||||||| | ||||||||  | |||||||||||  || || ||| ||||| || |||| |||| |  |||||||||||||| ||||||    
T  40276849 atttcaaatcgtgatcgtgtgagtgcaaaatataaagcaattgatcatagaattgataaggtgagcgatgatgtgatcaagtggctaaaagaagcagaca 40276948  T
Q  155 tgatcatacaaga 167  Q
    |  ||||||||||    
T  40276949 tactcatacaaga 40276961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 449
Target Start/End: Original strand, 40333946 - 40334054
Alignment:
Q  341 aatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcat 440  Q
    |||||||||| || ||||||||||||||||||||||||||  | ||||||||||||  ||| | | | ||||| | ||  | ||| |||||||| |||||    
T  40333946 aatggcagatgtttctcagttttagaggggaagatactcgctactcttttacaggtagtctttttcaagctttatcccaagggggattcaagactttcat 40334045  T
Q  441 ggatgatga 449  Q
    |||||||||    
T  40334046 ggatgatga 40334054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 446
Target Start/End: Complemental strand, 40257087 - 40256990
Alignment:
Q  349 attttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatga 446  Q
    ||||| ||||| ||| |||| |||||||||||| | ||||||||||| | |||||||  ||||||||||| ||  || || || ||||||||||||||    
T  40257087 atttttctcagctttcgaggagaagatactcgttattcttttacaggctctctctatcgtgctttgtgccaggtcggatttaaaaccttcatggatga 40256990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 451
Target Start/End: Original strand, 40406348 - 40406449
Alignment:
Q  350 ttttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatga 449  Q
    |||| ||||||||| | ||||||||||||||  | || |||||||| ||||||||  |||||||| |    ||||| ||||||| |||||||||||||||    
T  40406348 tttttctcagtttttgcggggaagatactcgctactcctttacaggatttctctaccatgctttgagtaatgagggattcaagatcttcatggatgatga 40406447  T
Q  450 gg 451  Q
    ||    
T  40406448 gg 40406449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 40597830 - 40597781
Alignment:
Q  286 gtgggatcttccttcggaagtaaaccaattgaggaatggaaagtatcact 335  Q
    ||||||||||||||  || |||||||||||||||||||||||| ||||||    
T  40597830 gtgggatcttccttaagaggtaaaccaattgaggaatggaaagcatcact 40597781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 449
Target Start/End: Original strand, 40387224 - 40387332
Alignment:
Q  341 aatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcat 440  Q
    ||||| |||| || ||||||||||||||||||||||||||  | ||||||||||||  ||| | | | ||||| | ||  | ||| |||||||| |||||    
T  40387224 aatgggagatgtttctcagttttagaggggaagatactcgctactcttttacaggtagtctttttcaagctttatcccaagggggattcaagactttcat 40387323  T
Q  441 ggatgatga 449  Q
    |||||||||    
T  40387324 ggatgatga 40387332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 448
Target Start/End: Complemental strand, 40597755 - 40597647
Alignment:
Q  340 aaatggcagattttcctcagttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttca 439  Q
    |||||||| |||||| | ||||||||||| |||||||| ||  | ||||||||||||  ||| ||| | ||||| || |  | ||| |||||||||||||    
T  40597755 aaatggcaaattttcttaagttttagaggagaagatacacgctactcttttacaggtaatctgtataaagctttatgtcaagggggattcaagaccttca 40597656  T
Q  440 tggatgatg 448  Q
    |||||||||    
T  40597655 tggatgatg 40597647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 451
Target Start/End: Complemental strand, 40457487 - 40457394
Alignment:
Q  358 agttttagaggggaagatactcgtcagtcttttacaggttttctctatgatgctttgtgccgggaggggttcaagaccttcatggatgatgagg 451  Q
    |||||| | ||||||||||||||  | || ||||| || || |||||| |||||||| | |  ||||| ||||||| |||||||||||||||||    
T  40457487 agtttttgcggggaagatactcgctactcctttacgggattcctctatcatgctttgcgtctagagggattcaagatcttcatggatgatgagg 40457394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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