View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_high_2 (Length: 826)
Name: NF17385_high_2
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 5e-80; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 287 - 442
Target Start/End: Original strand, 44501308 - 44501463
Alignment:
| Q |
287 |
caagaggtaggtagtgagtatcaaagattaagattagatgaagaggaacaagaacaagagttaggtgctgaccatgatgtttgaaagtcttatcaaagaa |
386 |
Q |
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| T |
44501308 |
caagaggtaggtagtgagtatcaaagattaagattatatgaagaggaacaagaacaagagttaggtgctgaccatgatgtttgaaagtcttatcaaagaa |
44501407 |
T |
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| Q |
387 |
cagaacacgctctctctagatcctctctttgctaaaacaagacaagacaccaactt |
442 |
Q |
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| T |
44501408 |
cagaacacgctctctctagatcctctctttgctaaaacaagacaagacaccaactt |
44501463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 44501036 - 44501201
Alignment:
| Q |
15 |
cacagatataagaagaacctagaagattcctacatcaacaaaacagtaaccttttttgtcgnnnnnnncagttacctttttatgtttttgcaaatacata |
114 |
Q |
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| T |
44501036 |
cacagatataagaagaacatagaagattcctacatcaacaaaacagtaaccttttttgtcgaaaaaaacagtaacctttttatgtttttgcaaatacata |
44501135 |
T |
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| Q |
115 |
aaataactgtnnnnnnnctgaaaatacccaaatataaatttcacaaaaccatgattcagtgattat |
180 |
Q |
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| T |
44501136 |
aaataactgtaaaaaaactgaaaatacccaaatataaatttcacaaaaccatgattcagtgattat |
44501201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 615 - 808
Target Start/End: Original strand, 44501636 - 44501836
Alignment:
| Q |
615 |
ggttatatgaatccacatatgtaaagctttgtttgcggcgatcaaatatggatacaaacacagtcatcgaacacgacaca-------gacactgatatgt |
707 |
Q |
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| T |
44501636 |
ggttatatgaatccacaaatgtatagctttgtttgcagcgatcaaacatggatacaaatacgtacatcgaacacgacacacgatacagacactgatatat |
44501735 |
T |
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| Q |
708 |
taacatcgttaataatttaatatcatgtcactgttggacacgtctaatctgaaaagcgtttgtgctttatagttcgcacgctcatccaatcaaatcataa |
807 |
Q |
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| T |
44501736 |
tgacatcgttaataatttaatgtcatgtcgctgttggacacgtctaatttaaagagtgtttgtgcttcataattcgcacgctcacccaatcaaattataa |
44501835 |
T |
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| Q |
808 |
a |
808 |
Q |
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| T |
44501836 |
a |
44501836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 469 - 551
Target Start/End: Original strand, 44501490 - 44501572
Alignment:
| Q |
469 |
acaaacaaataagctgactctggatgaaatggaaatgaaacacggactcgaagacttcgttaaatccaacaaatgaaacaagg |
551 |
Q |
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| T |
44501490 |
acaaacaaataagctgactctggatgaaatggaaatgaaacacggactcgaagacttcgttaaatccaacaaatgaaacaagg |
44501572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 220 - 261
Target Start/End: Original strand, 44501241 - 44501282
Alignment:
| Q |
220 |
ttctgggcctggaagtttcggtttagaacatgagaatctaag |
261 |
Q |
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| T |
44501241 |
ttctgggtctggaagtttcggtttagaacatgagaatctaag |
44501282 |
T |
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