View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_high_22 (Length: 416)
Name: NF17385_high_22
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 5148965 - 5148567
Alignment:
| Q |
1 |
ctgactctgaatgcacgtttgtgaggtacttgaatgaaactctctctcttaataacacaagtgtgtatggattttgggtgtattgtgactatgtgagtat |
100 |
Q |
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| T |
5148965 |
ctgactctgaatgcatgtttatgaggtacttgaatgaaactttctctcttaataacacaagtgtgtatggattttgggtgtattgtgactatgtgagtat |
5148866 |
T |
|
| Q |
101 |
atttatattacaagagctgaatgacatctagttaaatgttgtcttctgtgtgaataaagtggatggaataacttggaaggcaataagagtatcttcaata |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5148865 |
atttatattacaagagctgaattacatctagttaaatgttgtcttctgtgtgaataaagtggatggaataacttggaaggcaataagagtatcttcaata |
5148766 |
T |
|
| Q |
201 |
tatttcatatatcagcagaaaaagctaaaggatgaattgaggattgcttcataatgggttaacatattaagcttttgtgattttatcatttctaaggaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5148765 |
tatttcatatatcagcagaaaaagctaaaggatgaattgaggattgcttcataatgggttaacatattaagcttttgtgattttatcatttctaaggaaa |
5148666 |
T |
|
| Q |
301 |
agaataactgcctttggtgtgcttggagacttgtacatcaaactgtttaataattttatcagaaaatttatgttaatgtttactcgttattgcaaaata |
399 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5148665 |
agaataactgcctttggtgtgcttggagacttgtacagcaaactgtttaataattttatcagaaaatttatgttaatgtttactcgttattgcaaaata |
5148567 |
T |
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