View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_high_24 (Length: 398)
Name: NF17385_high_24
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_high_24 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 15 - 398
Target Start/End: Original strand, 20130925 - 20131308
Alignment:
| Q |
15 |
aatcaaatctcaggtttgattccaccagagattggaaagttgtcaaatcttttggtgtttttcgcttggcagaatcagcttgaaggaagcattccttcaa |
114 |
Q |
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| T |
20130925 |
aatcaactctcaggtttgattccaccagagattggaaagttgtcaaatcttttggtgtttttcgcttggcagaatcagcttgaaggaagcattccttcaa |
20131024 |
T |
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| Q |
115 |
gtttaggaaactgtagtaaacttcaagcacttgatttgtctaaaaattcactcactggtagcattccttcaggactgtttcagcttcaaaacctcacaaa |
214 |
Q |
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| T |
20131025 |
gtttaggaaactgtagtaaacttcaagcacttgatttgtctagaaattcactcactggtagcattccttcaggactatttcagcttcaaaacctcacaaa |
20131124 |
T |
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| Q |
215 |
actgcttttgatttcaaatgatatatcaggttctataccatcagaaataggtagttgtaaatctcttataaggttgaggcttggaaacaataggattact |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20131125 |
actgcttttgatttcaaatgatatatcaggttctataccatcagaaataggtagttgcaaatctcttataaggttgaggcttggaaacaataggattact |
20131224 |
T |
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| Q |
315 |
ggaagcattcctaagacaataggaaatctcaggaatttgaactttttagatctctctgggaaccgtctttcagggccggttccc |
398 |
Q |
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| T |
20131225 |
ggaagcattcctaagacaataggaaatctcaggaatttgaactttttagatctctctgggaaccgtctttcagcgccggttccc |
20131308 |
T |
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