View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17385_high_25 (Length: 397)

Name: NF17385_high_25
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17385_high_25
NF17385_high_25
[»] chr1 (3 HSPs)
chr1 (5-394)||(39771287-39771656)
chr1 (243-394)||(39756516-39756667)
chr1 (243-394)||(39761870-39762021)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 5 - 394
Target Start/End: Complemental strand, 39771656 - 39771287
Alignment:
Q  5 attgaatacctaacaatcaatttgtcaaccttggtcaaagagcattatttgtggcatgggactaccagcttccattctttaacaacatatcgttcacgtc 104  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||| ||||||||    
T  39771656 attgaatacctaacgatcaatttgtcaaccttggtcaaagagcattatttgtggcatgggactaccagcttt-----------aacatatctttcacgtc 39771568  T
Q  105 agctcttacgcannnnnnncaatataaccaccctctacatgctatataaccatctaaatattgtcatttaattctacaaaataccatagtaaattaagag 204  Q
    ||||||||||||       |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  39771567 agctcttacgcatttttttcaatataaccaccctctacatgctatataaccatctacctattgtcatttaattctacaaaataccatagtaaattaagag 39771468  T
Q  205 ctatacaccatagtactactactacatacatatctgcaaaatcatggcaacaataaaagtgcacggaaaccctatctcaacggccaccatgcgggttact 304  Q
    ||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39771467 ctatacaccata---------ctacatacatatctgcaaaatcatggcaacaataaaagtgcacggaagccctatctcaacggccaccatgcgggttact 39771377  T
Q  305 gccactctgtatgaaaaggagcttgaatttgagtttgtaagcattaacatgaggaatggtgaacacaaaaaggaacccttcatctcactc 394  Q
    || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39771376 gcaactttgtatgaaaaggagcttgaatttgagtttgtaagcattaacatgaggaatggtgaacacaaaaaggaacccttcatatcactc 39771287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 394
Target Start/End: Complemental strand, 39756667 - 39756516
Alignment:
Q  243 aaatcatggcaacaataaaagtgcacggaaa-ccctatctcaacggccaccatgcgggttactgccactctgtatgaaaaggagcttgaatttgagtttg 341  Q
    |||||||||||||||||||||| || ||||  ||||| ||||||||||||||||||||||||||| ||||||||||||||| || |||| |||||||||     
T  39756667 aaatcatggcaacaataaaagtccatggaagtcccta-ctcaacggccaccatgcgggttactgcaactctgtatgaaaagcagattgagtttgagtttt 39756569  T
Q  342 taagcattaacatgaggaatggtgaacacaaaaaggaacccttcatctcactc 394  Q
    | | |||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  39756568 ttaacattaacatgaggaatggagaacacaaaaaggaaccgttcatatcactc 39756516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 243 - 394
Target Start/End: Complemental strand, 39762021 - 39761870
Alignment:
Q  243 aaatcatggcaacaataaaagtgcacggaaa-ccctatctcaacggccaccatgcgggttactgccactctgtatgaaaaggagcttgaatttgagtttg 341  Q
    |||||||||||||||||||||| || ||||  ||||| ||||||||||||||||||||||||||| ||||||||||||||| || |||| |||||||||     
T  39762021 aaatcatggcaacaataaaagtccatggaagtcccta-ctcaacggccaccatgcgggttactgcaactctgtatgaaaagcagattgagtttgagtttt 39761923  T
Q  342 taagcattaacatgaggaatggtgaacacaaaaaggaacccttcatctcactc 394  Q
    | | |||||||||||||||||| ||||||||||||||||| ||||| ||||||    
T  39761922 ttaacattaacatgaggaatggagaacacaaaaaggaaccgttcatatcactc 39761870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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