View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17385_high_29 (Length: 387)

Name: NF17385_high_29
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17385_high_29
NF17385_high_29
[»] chr7 (14 HSPs)
chr7 (12-372)||(30792272-30792627)
chr7 (167-346)||(1088643-1088821)
chr7 (167-346)||(1557403-1557581)
chr7 (140-360)||(9532018-9532236)
chr7 (167-346)||(1604379-1604557)
chr7 (171-346)||(1105992-1106166)
chr7 (171-346)||(1596049-1596223)
chr7 (167-346)||(1541459-1541637)
chr7 (167-346)||(1550693-1550871)
chr7 (167-347)||(2321184-2321363)
chr7 (100-196)||(30791683-30791779)
chr7 (167-347)||(3955451-3955630)
chr7 (167-346)||(2329683-2329861)
chr7 (167-346)||(2337582-2337760)
[»] chr1 (3 HSPs)
chr1 (129-346)||(19250400-19250615)
chr1 (137-366)||(41668754-41668982)
chr1 (105-201)||(41669476-41669571)
[»] chr4 (9 HSPs)
chr4 (130-366)||(42977673-42977908)
chr4 (137-366)||(54122895-54123123)
chr4 (137-366)||(48712339-48712566)
chr4 (289-364)||(16880271-16880347)
chr4 (105-201)||(48713069-48713164)
chr4 (105-203)||(10337570-10337666)
chr4 (141-201)||(54122323-54122383)
chr4 (128-203)||(16879671-16879746)
chr4 (141-194)||(42978427-42978481)
[»] chr5 (7 HSPs)
chr5 (137-359)||(36620589-36620810)
chr5 (138-366)||(39102195-39102422)
chr5 (137-366)||(8873000-8873229)
chr5 (105-201)||(8873786-8873881)
chr5 (105-201)||(36619990-36620083)
chr5 (105-201)||(39102923-39103016)
chr5 (105-177)||(5225128-5225200)
[»] chr3 (2 HSPs)
chr3 (137-366)||(31657994-31658222)
chr3 (141-194)||(31657428-31657481)
[»] scaffold0491 (2 HSPs)
scaffold0491 (167-346)||(1109-1287)
scaffold0491 (161-346)||(5990-6174)
[»] chr8 (4 HSPs)
chr8 (167-346)||(18739230-18739408)
chr8 (167-346)||(18744194-18744372)
chr8 (161-346)||(18723497-18723681)
chr8 (161-346)||(18749149-18749333)
[»] chr6 (3 HSPs)
chr6 (137-366)||(1257788-1258016)
chr6 (106-201)||(8745990-8746086)
chr6 (106-201)||(8752325-8752421)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 372
Target Start/End: Complemental strand, 30792627 - 30792272
Alignment:
Q  12 caaagggacataattaaaaaccacgaagttacaaaagttgaaacaaaaaaccttcttgtttccatcttcnnnnnnnnnnnnnnnnnngtcatattcttct 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||    
T  30792627 caaagggacataattaaaaaccacgaagttacaaaagttgaaacaaaaaaccttcttgtttccatcttcttcctctctcttt-----gtcatattcttct 30792533  T
Q  112 tatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaa 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30792532 tatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacaacttctacatcatcatacaaa 30792433  T
Q  212 acaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattctttttgtgcaagtagaatctataaagcttaacaatatttatgtgcttt 311  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30792432 acaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattctttttgtgcaagcagaatctataaagcttaacaatatttatgtgcttt 30792333  T
Q  312 atttatgataatattctcacttcatttatgaaacttgtaacaaaagatgacacatttgttt 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30792332 atttatgataatattctcacttcatttatgaaacttgtaacaaaagatgacacatttgttt 30792272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 167 - 346
Target Start/End: Complemental strand, 1088821 - 1088643
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |||||| |||||| | |||||||||||||||||||| ||||| ||    
T  1088821 ctttttctccaattgaattccacagcttctacatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattc-tt 1088723  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    ||||||||| |||||| ||||||||| ||||||| | |||||||||||| |||||||||||||||||||||| |||||||    
T  1088722 ttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgataatattctcacttcatttttgaaact 1088643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 1557403 - 1557581
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||| ||||| |||||| |||||| | ||||||||| |||||||||| ||||| ||    
T  1557403 ctttttctccaattgaattccacagcttccacatcatcatacaagacagagaacaagcttcctttctccatgtattgatatatcaaaaacatgattc-tt 1557501  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    ||||||||| |||||| ||||||||| || |||| | |||||||||||| |||||||||||||||||||||| |||||||    
T  1557502 ttgtgcaagcagaatccataaagcttcacgatatgtttgtgctttatttctgataatattctcacttcatttctgaaact 1557581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 140 - 360
Target Start/End: Original strand, 9532018 - 9532236
Alignment:
Q  140 taacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgt 239  Q
    ||||||| | || ||||| |||||| |||||||||||||||||||| |||| |||||||||||||||||||||   ||||| | |||| |||||| ||||    
T  9532018 taacaatatttttatcattcattaagtctttttctccaattgaattccacaacttctacatcatcatacaaaaacgagaacaaacttcctttctc-acgt 9532116  T
Q  240 attgatagatcaaaaacacgattctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcattta 339  Q
    |||||||||||||||||| ||||||||| || |||  | |||| |||||||||||||||||||||||| ||||||| | ||||||||||| ||||||||     
T  9532117 attgatagatcaaaaacatgattctttt-gtacaatcataatccataaagcttaacaatatttatgtgatttattttttataatattctcgcttcatttt 9532215  T
Q  340 tgaaacttgtaacaaaagatg 360  Q
    ||||||| | | |||||||||    
T  9532216 tgaaactcgcatcaaaagatg 9532236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 167 - 346
Target Start/End: Complemental strand, 1604557 - 1604379
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||||||||| ||||||| ||| |||||||||||||||||||| ||| ||||| |||||| |||||| | |||||||||||||||||||| ||||| ||    
T  1604557 ctttttctccacttgaattccacggcttctacatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattc-tt 1604459  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    ||||||||| |||||| ||||||||| ||||||| |  ||||||||||| |||||||||| ||||||||||| |||||||    
T  1604458 ttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattttcacttcatttttgaaact 1604379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 171 - 346
Target Start/End: Complemental strand, 1106166 - 1105992
Alignment:
Q  171 ttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattctttttgt 270  Q
    ||||||||||||||| ||| |||||||||||||||||||| | | |||||  ||||| |||||| | ||| |||||||||||||||| ||||||||| ||    
T  1106166 ttctccaattgaattccacggcttctacatcatcatacaagatagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattctttt-gt 1106068  T
Q  271 gcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    ||||| |||||| ||||||||| ||||||| |  ||||||||||| |||||||||||||||||||||| |||||||    
T  1106067 gcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttcatttttgaaact 1105992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 171 - 346
Target Start/End: Complemental strand, 1596223 - 1596049
Alignment:
Q  171 ttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattctttttgt 270  Q
    ||||||| ||||||| ||| |||||||||||||||||||| ||| |||||  ||||| |||||| | ||| |||||||||||||||| ||||||||| ||    
T  1596223 ttctccacttgaattccacggcttctacatcatcatacaagacagagaacaggcttcctttctccatgtactgatagatcaaaaacatgattctttt-gt 1596125  T
Q  271 gcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    ||||| |||||| ||||||||| ||||||| |  ||||||||||| |||||||||||||||||||||| |||||||    
T  1596124 gcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttcatttttgaaact 1596049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 1541459 - 1541637
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||| ||||| ||||||| ||| |||||||||||||||||||| ||| ||||  |||||| | |||| | |||||||||||||||||||| ||||| ||    
T  1541459 cttttcctccacttgaattccacggcttctacatcatcatacaagacagagaataagcttcctctctccatgtattgatagatcaaaaacatgattc-tt 1541557  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    ||||||||| | |||| ||||||||| ||||||| |  ||||||||||| |||||||||||||||||||||| |||||||    
T  1541558 ttgtgcaagcaaaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttcatttctgaaact 1541637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 1550693 - 1550871
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||||||||||||||||| ||||||||||||||| |||||||| |||  |||| |||||| | |||| | ||| |||||||||||||||| ||||| |     
T  1550693 ctttttctccaattgaattccacagcttctacatcgtcatacaagacagtgaacaagcttcctctctccatgtactgatagatcaaaaacatgattc-tc 1550791  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    ||||||||| |||||| || |||||| ||||||| |  ||||||||||| ||  |||||||||||||||||| |||||||    
T  1550792 ttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgtcaatattctcacttcatttctgaaact 1550871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 167 - 347
Target Start/End: Complemental strand, 2321363 - 2321184
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||||||||||||||||| ||  || ||| ||||||||||||| ||  ||||| | |||| | |||| | ||| || ||||||||||||| ||||||||    
T  2321363 ctttttctccaattgaattccatggcctctgcatcatcatacaagacggagaacaaacttcctctctccatgtaatggtagatcaaaaacatgattcttt 2321264  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaactt 347  Q
    | ||||||| | |||| ||||||||| |||||||||  ||||||||||| |||||||||||||||||||||| | ||||||    
T  2321263 t-gtgcaagcaaaatccataaagcttcacaatatttcggtgctttatttctgataatattctcacttcatttctaaaactt 2321184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 100 - 196
Target Start/End: Original strand, 30791683 - 30791779
Alignment:
Q  100 tcatattcttcttatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttct 196  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||||||||  |||| ||| || |||||||||||||||||||| |||| |||||    
T  30791683 tcatattcttcttctgtgcctctgaaatcacatgtcctgctaacaatgtcttggtcattcatcaagtctttttctccaattgaattccacaacttct 30791779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 347
Target Start/End: Original strand, 3955451 - 3955630
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||| ||||||| |||||| |  ||||| |||||||||| ||| ||  ||||| |||||| ||| || |  || ||||||||||||||||  | |||||    
T  3955451 cttttcctccaatcgaattttatggcttcgacatcatcatgcaagacggagaacaagcttcctttttccatatactgatagatcaaaaacataactcttt 3955550  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaactt 347  Q
    |  |||||  | |||| ||||||||| ||||||||| |||||||||||| |||||||||| ||||||||||| | ||||||    
T  3955551 ta-tgcaaacaaaatccataaagcttcacaatatttctgtgctttatttctgataatattttcacttcatttctaaaactt 3955630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 346
Target Start/End: Complemental strand, 2329861 - 2329683
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||||||||||||||||| ||| |||||  | ||||||||||| ||| ||||| |||| | |||||| | ||| |  ||||||||||||| |||||||     
T  2329861 ctttttctccaattgaattccacggcttcaccttcatcatacaagacagagaacaagctacctttctccatgtactcgtagatcaaaaacatgattcttc 2329762  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    | ||| |   |||||| ||||||||| || ||||    ||||||||| | |||||||||||||||||||||| |||||||    
T  2329761 t-gtggagacagaatccataaagcttcacgatatgccggtgctttatatctgataatattctcacttcatttctgaaact 2329683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 346
Target Start/End: Complemental strand, 2337760 - 2337582
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||||||||||||||||| ||| ||||| || |||||||||||  || ||||| |||| | |||||| | ||| |  ||||||||||||| |||||||     
T  2337760 ctttttctccaattgaattccacggcttcaacttcatcatacaagccagagaacaagctacctttctccatgtactcgtagatcaaaaacatgattcttc 2337661  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    | ||| |   |||||| ||||||||| || |||| |  ||||||||| | |||||||||| ||||||||||| |||||||    
T  2337660 t-gtggagacagaatccataaagcttcacgatatgtcggtgctttatatctgataatattttcacttcatttctgaaact 2337582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 129 - 346
Target Start/End: Complemental strand, 19250615 - 19250400
Alignment:
Q  129 acatgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttct 228  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||  ||||| ||||||     
T  19250615 acatgtcatgctaacattgtcttcatcatccattaagtctttttctccaattgaattccacaacttctacatcatcatacaaaaccgagaacaagcttca 19250516  T
Q  229 tttctctacgtattgatagatcaaaaacacgattctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattct 328  Q
    ||| || | |||||||||||||||||||| ||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||    
T  19250515 tttttc-atgtattgatagatcaaaaacatgattc-ttttgtgcaagcagaatccataaagcttaacaatatttatgtgttttatatatgataatattct 19250418  T
Q  329 cacttcatttatgaaact 346  Q
    ||||||| || |||||||    
T  19250417 cacttcaattctgaaact 19250400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 137 - 366
Target Start/End: Original strand, 41668754 - 41668982
Alignment:
Q  137 tgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagc-ttcttttctct 235  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| ||| |||||||||||  ||||| | | ||||||| ||     
T  41668754 tgctaacaatgtcttcatcatcaattaagtctttttctgcaattgaattccacagcttctaaatcctcatacaaaactgagaacaaactttcttttttc- 41668852  T
Q  236 acgtattgatagatcaaaaacacgattctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttca 335  Q
    | |||| ||||||| |||||||  |||| ||||||||||| | |||| ||||||||||||||||||||| |||||||||| | |||||||| ||||||||    
T  41668853 atgtatcgatagattaaaaacattattc-ttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttattttttataatattttcacttca 41668951  T
Q  336 tttatgaaacttgtaacaaaagatgacacat 366  Q
     || |||||||   | |||||||||||||||    
T  41668952 attctgaaactcacatcaaaagatgacacat 41668982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 41669571 - 41669476
Alignment:
Q  105 ttcttcttatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatc 201  Q
    |||||||| ||||| ||||||| |||||| |  || |||||||||||||||||||||||  | ||||||| ||||||||||||| | ||||| ||||    
T  41669571 ttcttcttttgtgcttctgaaatcacatgcctggc-aacaatgtcttcatcatccattatgtttttttcttcaattgaatttcagaacttcttcatc 41669476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 130 - 366
Target Start/End: Original strand, 42977673 - 42977908
Alignment:
Q  130 catgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagctt-ct 228  Q
    |||||| |||||||||||||||||||||| ||||| ||||||||| ||||| |||| ||||||||||| ||| |||||||||||  ||||| | ||| ||    
T  42977673 catgtcctgctaacaatgtcttcatcatcaattaagtctttttctgcaattaaattccacagcttctaaatcctcatacaaaaccgagaacaaactttct 42977772  T
Q  229 tttctctacgtattgatagatcaaaaacacgattctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattct 328  Q
    ||| || | |||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||||||||||| |||||||||| ||||||||||||    
T  42977773 tttttc-atgtattgatagattaaaaacatgattctttt-gtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattct 42977870  T
Q  329 cacttcatttatgaaacttgtaacaaaagatgacacat 366  Q
    ||||||| || ||||| | | | |||||||||||||||    
T  42977871 cacttcaattctgaaattcgcatcaaaagatgacacat 42977908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 137 - 366
Target Start/End: Complemental strand, 54123123 - 54122895
Alignment:
Q  137 tgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagctt-cttttctct 235  Q
    |||||||||||||||||||||| ||||| |||||| || |||||||||| |||| |||||| |||  ||||||||||  ||||| | ||| ||||| ||     
T  54123123 tgctaacaatgtcttcatcatcaattaagtcttttcctgcaattgaattccacatcttctaaatccgcatacaaaactgagaacaaactttcttttttc- 54123025  T
Q  236 acgtattgatagatcaaaaacacgattctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttca 335  Q
    | |||||||||||| ||||||| ||||||||| ||||||| | ||| ||||||||||||  |||||||| |||||||||| | |||||||||||||||||    
T  54123024 atgtattgatagattaaaaacatgattctttt-gtgcaagcaaaatatataaagcttaaagatatttatctgctttattttttataatattctcacttca 54122926  T
Q  336 tttatgaaacttgtaacaaaagatgacacat 366  Q
     || |||||||   | |||||||||||||||    
T  54122925 attgtgaaactcacatcaaaagatgacacat 54122895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 137 - 366
Target Start/End: Original strand, 48712339 - 48712566
Alignment:
Q  137 tgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagctt-cttttctct 235  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||| |||| |||||| ||| ||||||||||   ||||| | ||| ||||| ||     
T  48712339 tgctaacaatgtcttcatcatcaattaagtctttttctgcaattgaattccacaacttctaaatcctcatacaaaatcgagaacaaactttcttttttc- 48712437  T
Q  236 acgtattgatagatcaaaaacacgattctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttca 335  Q
    | ||||||||||||  |||| | ||||||||| ||||||| | |||| ||||||||||||||||||||| || ||||||| |||||||||||||||||||    
T  48712438 atgtattgatagattgaaaatatgattctttt-gtgcaagcaaaatccataaagcttaacaatatttatctg-tttatttttgataatattctcacttca 48712535  T
Q  336 tttatgaaacttgtaacaaaagatgacacat 366  Q
     || ||||| | | | ||||||| |||||||    
T  48712536 attctgaaaatcgcatcaaaagaagacacat 48712566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 289 - 364
Target Start/End: Complemental strand, 16880347 - 16880271
Alignment:
Q  289 gcttaacaatatttatgtgctttatttatgataatattctcac-ttcatttatgaaacttgtaacaaaagatgacac 364  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| ||||||| ||||||| | | |||||||||||||    
T  16880347 gcttaacgatatttatgtgctttatttctgataatattctcacattcatttctgaaactcgcatcaaaagatgacac 16880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 48713164 - 48713069
Alignment:
Q  105 ttcttcttatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatc 201  Q
    |||||||| ||||| ||||||| |||||| |  || |||||||||||||||||||||||  | ||||||| ||||||||||||||||||||| ||||    
T  48713164 ttcttcttttgtgcttctgaaatcacatgcctggc-aacaatgtcttcatcatccattatttttttttcttcaattgaatttcacagcttcttcatc 48713069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 203
Target Start/End: Original strand, 10337570 - 10337666
Alignment:
Q  105 ttcttcttatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcat 203  Q
    |||||||| ||| | ||||||| |||||||| ||  ||||||||||||||| ||||||| || ||||||| ||||||||||||||||||||| ||||||    
T  10337570 ttcttcttttgtacttctgaaatcacatgtc-tgacaacaatgtcttcatcctccattatat-tttttcttcaattgaatttcacagcttcttcatcat 10337666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 54122323 - 54122383
Alignment:
Q  141 aacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatc 201  Q
    |||||||||||||||||||||||  | ||||||| ||||||||||||||||||||| ||||    
T  54122323 aacaatgtcttcatcatccattatgtttttttcttcaattgaatttcacagcttcttcatc 54122383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 16879671 - 16879746
Alignment:
Q  128 cacatgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcat 203  Q
    |||||| ||| |||| ||| ||||||||||||||||| |||||||| ||||||||||| |||| ||||| ||||||    
T  16879671 cacatgccatactaagaatctcttcatcatccattaagtctttttcaccaattgaattccacaacttcttcatcat 16879746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 42978481 - 42978427
Alignment:
Q  141 aacaatgtcttcatcatccatta-aatctttttctccaattgaatttcacagctt 194  Q
    ||||||||||||||||||||||| | | ||||||| |||||||||||||| ||||    
T  42978481 aacaatgtcttcatcatccattatattttttttcttcaattgaatttcacggctt 42978427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 137 - 359
Target Start/End: Complemental strand, 36620810 - 36620589
Alignment:
Q  137 tgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagctt-cttttctct 235  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| ||| |||||||||||  ||||| | ||| || || ||     
T  36620810 tgctaacaatgtcttcatcatcaattaagtctttttctgcaattgaattccacagcttctaaatcctcatacaaaaccgagaacaaactttctcttttc- 36620712  T
Q  236 acgtattgatagatcaaaaacacgattctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttca 335  Q
    | |||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  36620711 atgtattgatagattaaaaacatgattctttt-gtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca 36620613  T
Q  336 tttatgaaacttgtaacaaaagat 359  Q
     || ||||||| | | ||||||||    
T  36620612 attctgaaactcgcatcaaaagat 36620589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 138 - 366
Target Start/End: Original strand, 39102195 - 39102422
Alignment:
Q  138 gctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagctt-cttttctcta 236  Q
    ||||||||||||||||||||| ||||| ||||||||| |||||||||| |||| |||||| ||| |||||||||||  ||||| | ||| || || || |    
T  39102195 gctaacaatgtcttcatcatcaattaagtctttttctgcaattgaattccacaacttctaaatcctcatacaaaaccgagaacaaactttctcttttc-a 39102293  T
Q  237 cgtattgatagatcaaaaacacgattctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcat 336  Q
     ||||||||| || ||||||| | ||||||| ||||||| | |||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||     
T  39102294 tgtattgatatattaaaaacatgcttctttt-gtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttcaa 39102392  T
Q  337 ttatgaaacttgtaacaaaagatgacacat 366  Q
    || | ||||| | | |||||||||||||||    
T  39102393 ttctaaaactcgcatcaaaagatgacacat 39102422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 137 - 366
Target Start/End: Original strand, 8873000 - 8873229
Alignment:
Q  137 tgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagctt-cttttctct 235  Q
    |||||||||||||||||||||| ||||| ||||||||| |||||||||| |||| |||||| ||| ||||||||||   ||||| | ||| ||||| ||     
T  8873000 tgctaacaatgtcttcatcatcaattaagtctttttctgcaattgaattccacatcttctaaatcctcatacaaaatcgagaacaaactttcttttttc- 8873098  T
Q  236 acgtattgatagatcaaaaacacgattctttttgtgcaagtagaa-tctataaagcttaacaatatttatgtgctttatttatgataatattctcacttc 334  Q
    | |||||||||||| ||||||| ||||||||| ||||||| | || || ||||||||||| ||||||||| |||||||||| | ||||||||||||||||    
T  8873099 atgtattgatagattaaaaacatgattctttt-gtgcaagcaaaaatccataaagcttaataatatttatctgctttattttttataatattctcacttc 8873197  T
Q  335 atttatgaaacttgtaacaaaagatgacacat 366  Q
    | || ||||||| | | |||| ||||||||||    
T  8873198 aattctgaaactggcatcaaacgatgacacat 8873229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 8873881 - 8873786
Alignment:
Q  105 ttcttcttatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatc 201  Q
    |||||||| ||||| ||||||| |||||| | ||  |||||||||||||||||||||||  | ||||||| ||||||||||||||||||||| ||||    
T  8873881 ttcttcttttgtgcttctgaaatcacatgcc-tgaaaacaatgtcttcatcatccattatgtttttttcttcaattgaatttcacagcttcttcatc 8873786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 201
Target Start/End: Original strand, 36619990 - 36620083
Alignment:
Q  105 ttcttcttatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatc 201  Q
    |||||||| ||||| ||||||| ||||||||  || ||||||||||||||||||||||   | ||||||| ||||||||||||||||||||| ||||    
T  36619990 ttcttcttttgtgcttctgaaatcacatgtctggc-aacaatgtcttcatcatccattg--tttttttcttcaattgaatttcacagcttcttcatc 36620083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 39103016 - 39102923
Alignment:
Q  105 ttcttcttatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatc 201  Q
    |||||||| ||||| ||||||| |||||| |  || ||||||||||||||||||||||   | ||||||| ||||||||||||||||||||| ||||    
T  39103016 ttcttcttttgtgcttctgaaatcacatggctggc-aacaatgtcttcatcatccattg--tttttttcttcaattgaatttcacagcttcttcatc 39102923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 5225200 - 5225128
Alignment:
Q  105 ttcttcttatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctcca 177  Q
    |||||||| || |||  ||||| |||||||| |||||||||||||||||||| |||| || ||||||||||||    
T  5225200 ttcttcttttgcgcccttgaaaacacatgtcctgctaacaatgtcttcatcagccatcaagtctttttctcca 5225128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 137 - 366
Target Start/End: Complemental strand, 31658222 - 31657994
Alignment:
Q  137 tgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagctt-cttttctct 235  Q
    |||||||||||||||||||||| ||||| ||||||||| ||||| ||||  |||||||||| ||| ||||| |||||  ||||| | ||| ||||| ||     
T  31658222 tgctaacaatgtcttcatcatcaattaagtctttttctgcaattaaattctacagcttctaaatcctcatataaaaccgagaacaaactttcttttttc- 31658124  T
Q  236 acgtattgatagatcaaaaacacgattctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttca 335  Q
    | |||||||||||| ||||||| ||||||||| ||||||| | |||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  31658123 atgtattgatagattaaaaacatgattctttt-gtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatattctcacttca 31658025  T
Q  336 tttatgaaacttgtaacaaaagatgacacat 366  Q
     || ||||| | | | |||||||||||||||    
T  31658024 attctgaaattcgcatcaaaagatgacacat 31657994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 194
Target Start/End: Original strand, 31657428 - 31657481
Alignment:
Q  141 aacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagctt 194  Q
    ||||||||||||||||||||||| || ||||||| |||||||||||||| ||||    
T  31657428 aacaatgtcttcatcatccattatatttttttcttcaattgaatttcacggctt 31657481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0491
Description:

Target: scaffold0491; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 1109 - 1287
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||| ||||| ||||||| |||  ||| ||||||||||||||| ||| ||||| |||||| |||||| | |||||||||||||||||||| ||||||||    
T  1109 cttttcctccacttgaattccacgacttttacatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttt 1208  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    | ||||||| |||||| ||||||||| ||||||| |  ||||||||||| |||||||||||||||||||||| |||||||    
T  1209 t-gtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttcatttctgaaact 1287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0491; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 161 - 346
Target Start/End: Original strand, 5990 - 6174
Alignment:
Q  161 ttaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacga 260  Q
    |||| |||||||||||| ||||||| ||  |||||||||||||||||||| ||| ||||  |||||| | | || | |||||||||||||||||||| ||    
T  5990 ttaactctttttctccacttgaattgcagggcttctacatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatga 6089  T
Q  261 ttctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    ||| ||||||||||| |||| | ||||||||| || |||| | |||||||||||| || ||| ||||||||||||||| |||||||    
T  6090 ttc-ttttgtgcaagcagaaaccataaagcttcacgatatgtttgtgctttatttctgttaaaattctcacttcatttctgaaact 6174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 18739230 - 18739408
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||| ||||| ||||||| |||  ||| ||||||||||||||| ||| ||||| |||||| |||||| | |||||||||||||||||||| ||||||||    
T  18739230 cttttcctccacttgaattccacgacttttacatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttt 18739329  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    | ||||||| |||||| ||||||||| ||||||| |  ||||||||||| |||||||||||||||||||||| |||||||    
T  18739330 t-gtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttcatttctgaaact 18739408  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 167 - 346
Target Start/End: Original strand, 18744194 - 18744372
Alignment:
Q  167 ctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt 266  Q
    ||||| ||||| ||||||| |||  ||| ||||||||||||||| ||| ||||| |||||| |||||| | |||||||||||||||||||| ||||||||    
T  18744194 cttttcctccacttgaattccacgacttttacatcatcatacaagacagagaacaagcttcctttctccatgtattgatagatcaaaaacatgattcttt 18744293  T
Q  267 ttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    | ||||||| |||||| ||||||||| ||||||| |  ||||||||||| |||||||||||||||||||||| |||||||    
T  18744294 t-gtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatattctcacttcatttctgaaact 18744372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 161 - 346
Target Start/End: Original strand, 18723497 - 18723681
Alignment:
Q  161 ttaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacga 260  Q
    |||| |||||||||||| ||||||||||  |||||||||||||||||||| ||| ||||  |||||| | | || | |||||||||||||||||||| ||    
T  18723497 ttaactctttttctccacttgaatttcatggcttctacatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatga 18723596  T
Q  261 ttctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    ||| ||||||||||| |||||| ||||||||| || |||| | |||||||||||| || ||| ||||||||||||||| |||||||    
T  18723597 ttc-ttttgtgcaagcagaatccataaagcttcactatatgtttgtgctttatttctgttaaaattctcacttcatttctgaaact 18723681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 161 - 346
Target Start/End: Original strand, 18749149 - 18749333
Alignment:
Q  161 ttaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacga 260  Q
    |||| |||||||||||| ||||||| ||  |||||||||||||||||||| ||| ||||  |||||| | | || | |||||||||||||||||||| ||    
T  18749149 ttaactctttttctccacttgaattccatggcttctacatcatcatacaagacagagaataagcttcctctatccatgtattgatagatcaaaaacatga 18749248  T
Q  261 ttctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttcatttatgaaact 346  Q
    ||| ||||||||||| |||||| ||||||||| ||||||| | |||||||||||| || ||| ||||||||||||||| |||||||    
T  18749249 ttc-ttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctgttaaaattctcacttcatttctgaaact 18749333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 137 - 366
Target Start/End: Complemental strand, 1258016 - 1257788
Alignment:
Q  137 tgctaacaatgtcttcatcatccattaaatctttttctccaattgaatttcacagcttctacatcatcatacaaaacaaagaactagctt-cttttctct 235  Q
    |||||||||||||||||||||| ||||| || |||||| |||||||||| | ||||||||| ||| |||||||||||  ||||| | ||| ||||| ||     
T  1258016 tgctaacaatgtcttcatcatcaattaagtccttttctgcaattgaattcctcagcttctaaatcctcatacaaaaccgagaacaaactttcttttttc- 1257918  T
Q  236 acgtattgatagatcaaaaacacgattctttttgtgcaagtagaatctataaagcttaacaatatttatgtgctttatttatgataatattctcacttca 335  Q
    | |||||||||||| ||||||| ||||||||| ||||||  | |||  |||||| |||||||||||||| |||||||||| |||||||||||||||||||    
T  1257917 atgtattgatagattaaaaacatgattctttt-gtgcaaacaaaattcataaagtttaacaatatttatctgctttatttttgataatattctcacttca 1257819  T
Q  336 tttatgaaacttgtaacaaaagatgacacat 366  Q
     || ||||||| | | ||||| |||||||||    
T  1257818 attctgaaactcgcatcaaaaaatgacacat 1257788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 8746086 - 8745990
Alignment:
Q  106 tcttcttatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctc--caattgaatttcacagcttctacatc 201  Q
    ||||||| ||||| ||||||| ||||||||  || ||||||||||||||||||||||| || ||||| ||  ||||||||||||||||||||| ||||    
T  8746086 tcttcttttgtgcttctgaaatcacatgtctggc-aacaatgtcttcatcatccattatatttttttttcttcaattgaatttcacagcttcttcatc 8745990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 201
Target Start/End: Complemental strand, 8752421 - 8752325
Alignment:
Q  106 tcttcttatgtgcctctgaaaccacatgtcatgctaacaatgtcttcatcatccattaaatctttttctc--caattgaatttcacagcttctacatc 201  Q
    ||||||| ||||| ||||||| ||||||||  || ||||||||||||||||||||||| || ||||| ||  ||||||||||||||||||||| ||||    
T  8752421 tcttcttttgtgcttctgaaatcacatgtctggc-aacaatgtcttcatcatccattatatttttttttcttcaattgaatttcacagcttcttcatc 8752325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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