View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_high_31 (Length: 376)
Name: NF17385_high_31
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 361
Target Start/End: Complemental strand, 36386274 - 36385926
Alignment:
| Q |
13 |
tgtttcataatattagacaaggactaagtttaagcatgctaatttgatgtcaatcatggtagcagcagctacaatattcccttcacatgtgaaaggttaa |
112 |
Q |
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| T |
36386274 |
tgtttcacaatattagacaaggactaagtttaagcatgctaatttgatgtcaatcatggtagcagcagctacaatattcccttcacatgtgaaaggttaa |
36386175 |
T |
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| Q |
113 |
taatacacgaacatggtaaggagggtacaaaggccttaaatttggaacctgcaaccttcaaaatgctttgttcttggcagaccaattacaaatggtgttc |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36386174 |
taatacacgaacatggtaaggagggtacaaaggccttaaatttggaacctgcaaccttcaaaatgctttgttcttggcagaccaattacaaatggtgctc |
36386075 |
T |
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| Q |
213 |
tcattgcctagataattttcattgcaaatggcattgaaggctttgcttcctcagaaagtagtcttcatgttctgttttgagaaatggaaatgaagaatga |
312 |
Q |
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| T |
36386074 |
tcattgcctagataattttcattgcaaatggcattgaaggctttgcttcctcagaaagcagtcttcatgttctgttttgagaaatggaaatgaagaatga |
36385975 |
T |
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| Q |
313 |
ttggaaacaaatgaatgtgagaataaaagtgcatttgtagagaggtatt |
361 |
Q |
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| T |
36385974 |
ttggaaacaaatgaatgtgagaataaaagtgcatttgtagagaggtatt |
36385926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 165 - 269
Target Start/End: Complemental strand, 36370735 - 36370631
Alignment:
| Q |
165 |
aaccttcaaaatgctttgttcttggcagaccaattacaaatggtgttctcattgcctagataattttcattgcaaatggcattgaaggctttgcttcctc |
264 |
Q |
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| T |
36370735 |
aaccttcaaaatgatttgttcctggcagactaatgaaaaatagtgctgtaattgtctagataattttcattgcaaatggcattaaagactttgcttcctc |
36370636 |
T |
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| Q |
265 |
agaaa |
269 |
Q |
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||||| |
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| T |
36370635 |
agaaa |
36370631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 36387267 - 36387200
Alignment:
| Q |
26 |
tagacaaggactaagtttaagcatgctaatttgatgtcaatcatggtagcagcagctacaatattcccttc |
96 |
Q |
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| T |
36387267 |
tagacaaggactaggtttaagcatgctaatttgatgtcaatgatg---gcagcagctacaatattcccttc |
36387200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 36373077 - 36372994
Alignment:
| Q |
25 |
ttagacaaggactaagtttaagcatgctaa-tttgatgtcaatcatggtagcagcagctacaatattcccttcacatgtgaaaggtt |
110 |
Q |
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| T |
36373077 |
ttagacaatgactgggtttaagtatgctaaatttgatgtcaatgatggtagcagc---tacaatattcccttcacctgtgaaaggtt |
36372994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 261
Target Start/End: Complemental strand, 36378279 - 36378151
Alignment:
| Q |
129 |
taaggagggtacaaaggccttaaatttggaacctgcaaccttcaaaatgctttgttcttggc---agaccaattacaaatggtgttctcattgcctagat |
225 |
Q |
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||||||||||| ||||||||||||| |||||||| |||||||| |||||| |||| |||| ||| | |||| ||| | |||||| |||||| |
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| T |
36378279 |
taaggagggtataaaggccttaaatgtggaacct-------tcaaaatgatttgtttgtggctgcagactaatcaaaaatagtgctgtcattgtctagat |
36378187 |
T |
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| Q |
226 |
aattttcattgcaaatggcattgaaggctttgcttc |
261 |
Q |
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| T |
36378186 |
aattttcgttgcaaatggcattgaagactttgcttc |
36378151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 329
Target Start/End: Complemental strand, 36376049 - 36376006
Alignment:
| Q |
286 |
gttttgagaaatggaaatgaagaatgattggaaacaaatgaatg |
329 |
Q |
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| T |
36376049 |
gttttgagaaaaggaaatgaagaatgattagaaacaaatgaatg |
36376006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 36370586 - 36370543
Alignment:
| Q |
292 |
agaaatggaaatgaagaatgattggaaacaaatgaatgtgagaa |
335 |
Q |
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||||| |||||||||||||||||| |||||||||||| |||||| |
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| T |
36370586 |
agaaaaggaaatgaagaatgattgaaaacaaatgaatttgagaa |
36370543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 36379199 - 36379150
Alignment:
| Q |
286 |
gttttgagaaatggaaatgaagaatgattggaaacaaatgaatgtgagaa |
335 |
Q |
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| T |
36379199 |
gttttgagaaaagaaaatgaagaattattcaaaacaaatgaatgtgagaa |
36379150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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