View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_high_34 (Length: 335)
Name: NF17385_high_34
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_high_34 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 321
Target Start/End: Original strand, 42158610 - 42158930
Alignment:
| Q |
1 |
aagtttatatgttatttcaactttttcaagcaatgattatcatgattcatgaatgatgttgctatgataatagattatcaacgtggattctctcttttgg |
100 |
Q |
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| T |
42158610 |
aagtttatatgttatttcaactttttcaagcaatgattatcatgattcatgaatgatgttgctatgataatagattatcaacgtggattctctcttttgg |
42158709 |
T |
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| Q |
101 |
tttgtccctccaaacagtaattagccgttggacattgagcaacaaccaaccatggtttgacaaaccacctgtcgcagtaagtcagaccactaatttctaa |
200 |
Q |
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| T |
42158710 |
tttgtccatccaaacagtaattagccgttggacattgaccaacaaccaaccatggtttgacaaaccacctatcgtagtaagtcagaccactaatttctaa |
42158809 |
T |
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| Q |
201 |
gaaatctatgtggtttgacgaaccaaagtatatatggtccgtccaaccactagttggttgttcgatataaaatccaaatctaaagataaagagacaaacc |
300 |
Q |
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| T |
42158810 |
gaaatctatgtggtttgacgaaccacagtatatatggtccgttcaaccactagttggttgtttgatataaaatccaaatctaaagataaagagacaaacc |
42158909 |
T |
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| Q |
301 |
tgtcttgtctgtctctaagtt |
321 |
Q |
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| T |
42158910 |
tgtcttgtctgtctctaagtt |
42158930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 42146585 - 42146635
Alignment:
| Q |
271 |
aatccaaatctaaagataaagagacaaacctgtcttgtctgtctctaagtt |
321 |
Q |
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| T |
42146585 |
aatcaaaatataaagataaagagacaaacctgtcttgtcggtctctaagtt |
42146635 |
T |
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