View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17385_high_41 (Length: 289)

Name: NF17385_high_41
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17385_high_41
NF17385_high_41
[»] chr3 (1 HSPs)
chr3 (1-289)||(3758970-3759258)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 3759258 - 3758970
Alignment:
Q  1 tctttgatcattcaaaatatgatgaaattggagagaatatgtagtgatccacttccagcagaggcttttgcaaaactacaagttattaaagtgaaaaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3759258 tctttgatcattcaaaatatgatgaaattggagagaatatgtagtgatccacttccagcagaggcttttgcaaaactacaagttattaaagtgaaaaact 3759159  T
Q  101 gtgatctgatggagtctgttttcttgcattcaatggttcaacacctaacagaacttgttgaaattgagatttctgaatgtagatatatgaactatatcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3759158 gtgatctgatggagtctgttttcttgcattcaatggttcaacacctaacagaacttgttgaaattgagatttctgaatgtagatatatgaactatatcat 3759059  T
Q  201 agccaagaaaatacaagagaatgaaggagaagatgacaagatagcgctcccgaaaatgcgttcacttacgcttgaatctttaccttccc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3759058 agccaagaaaatacaagagaatgaaggagaagatgacaagatagcgctcccgaaattgcgttcacttacgcttgaatctttaccttccc 3758970  T

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