View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17385_high_42 (Length: 285)
Name: NF17385_high_42
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_high_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 2 - 265
Target Start/End: Complemental strand, 45269648 - 45269385
Alignment:
| Q |
2 |
tggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggcatcatctgctaatcaattaaaccaggttaatatgta |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45269648 |
tggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggcatcatctgctaatcaattaaaccaggttaatatgta |
45269549 |
T |
|
| Q |
102 |
tgatagtgctcataaaattttgtaccgctactttagacaatatttaccaaggttgcatagtttatgagctaaattagagaaattgtgatagtttagacac |
201 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45269548 |
tgatactgctcataaaattttgtaccgctactttagacaatatttaccaaggttgcatagtttatgagctaaattagagaaattgtgatagtttagacac |
45269449 |
T |
|
| Q |
202 |
actaaattgaaagtatattaaaaaacataaaaaggttgcattaagttctcttcaagcttctgtc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45269448 |
actaaattgaaagtatattaaaaaacataaaaaggttgcattaagttctcttcaagcttctgtc |
45269385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 16863124 - 16863018
Alignment:
| Q |
2 |
tggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggcatcatctgctaatcaattaaaccaggttaatatgta |
101 |
Q |
| |
|
||||||||||| | |||||| || | ||| | |||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| |||| | |
|
|
| T |
16863124 |
tggagtctttagatatatagcatttgataaaccttctccatatttctccacaaactttcttggcatcatctatcaattaattaaaccaaattagtatgca |
16863025 |
T |
|
| Q |
102 |
tgatagt |
108 |
Q |
| |
|
||||||| |
|
|
| T |
16863024 |
tgatagt |
16863018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 17605548 - 17605466
Alignment:
| Q |
2 |
tggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggcatcatctgctaatcaatta |
84 |
Q |
| |
|
||||||||||| |||||||| ||| |||| | || ||||||||| ||||||||||||||||||||| |||| |||| ||||| |
|
|
| T |
17605548 |
tggagtctttagacatatagcttttggtagaccttttccatatttttccacaaactttcttggcatcctctgttaattaatta |
17605466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 16873105 - 16873020
Alignment:
| Q |
2 |
tggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggcatcatctgctaatcaattaaac |
87 |
Q |
| |
|
||||||||||| | |||||| ||| | ||| | ||||||||||||||| ||||||||||| ||||||||||| ||| |||||||| |
|
|
| T |
16873105 |
tggagtctttagatatatagcttttgataaaccttctccatatttctctacaaactttctcggcatcatctgtcaattaattaaac |
16873020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 17612549 - 17612453
Alignment:
| Q |
2 |
tggagtctttacacatatagttttcggtaagcattctccatatttctccacaaactttcttggcatcatctgctaatcaattaaaccaggttaatat |
98 |
Q |
| |
|
||||||||||| | |||||| || | ||| | |||||||||||||||||||||||||||||| || ||||| | | |||||||||| ||||||| |
|
|
| T |
17612549 |
tggagtctttagatatatagcatttgataaaccttctccatatttctccacaaactttcttgggattatctgtcagttaattaaaccatattaatat |
17612453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 16867960 - 16867925
Alignment:
| Q |
38 |
tccatatttctccacaaactttcttggcatcatctg |
73 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16867960 |
tccatatttctccacaaattttcttggcatcatctg |
16867925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University