View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_high_49 (Length: 251)
Name: NF17385_high_49
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_high_49 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 9375164 - 9375383
Alignment:
| Q |
1 |
cacgtatattctagaagctttggttaaactacttgtggtccgagttacgtggtatttctagaagcttacttgttgtcggtttattttggtgtgcgcttca |
100 |
Q |
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| T |
9375164 |
cacgtatattctagaagctttggttaaactacttgtgctccgagttacgtggtatttctagaagcttacttgttgccggtttattttggtgtgcgcttca |
9375263 |
T |
|
| Q |
101 |
aattatttttaaaatatatttggttaaaatatattttgtgcttataggaaattgttgctgaaattataattatggacatctcaattgtttagcctattga |
200 |
Q |
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|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| ||||||| |
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| T |
9375264 |
aattattt---------------ttaaaatatattttgtgcttatagaaaattgttgctgaaattataattatggacatttgaattgtttagtctattga |
9375348 |
T |
|
| Q |
201 |
agaaaaagctcatgcagaacaaagactatataagg |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
9375349 |
agaaaaagctcatgcagaacaaagactatataagg |
9375383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 129 - 235
Target Start/End: Complemental strand, 55359244 - 55359137
Alignment:
| Q |
129 |
atatattttgtgcttataggaaattgttgctgaaattataattatggacatctcaattgt-ttagcctattgaagaaaaagctcatgcagaacaaagact |
227 |
Q |
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| T |
55359244 |
atatattttgtgtttctagaagattgttgttgaaaatataattatggacaactggattgtgttagcccattgaagaaaaagctcatgcagaacaatgact |
55359145 |
T |
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| Q |
228 |
atataagg |
235 |
Q |
| |
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|||||||| |
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| T |
55359144 |
atataagg |
55359137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 47204827 - 47204727
Alignment:
| Q |
43 |
agttacgtggtatttctagaagcttacttgttgtcggtttattttggtgtgcgcttcaaattatttttaaaatatatttggttaaaatatattttgtgct |
142 |
Q |
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| T |
47204827 |
agttacgttgtgtttttagaagattatttattgtcggtttaagttgtcgtgcacttcaagttatttttaagatagatttgtttcaaatatattgtgtgct |
47204728 |
T |
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| Q |
143 |
t |
143 |
Q |
| |
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| |
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|
| T |
47204727 |
t |
47204727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 32274364 - 32274313
Alignment:
| Q |
127 |
aaatatattttgtgcttataggaaattgttgctgaaattataattatggaca |
178 |
Q |
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||||||||||||||||| ||| ||||||||||||||| |||| |||||||| |
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| T |
32274364 |
aaatatattttgtgcttctagaaaattgttgctgaaaatatatatatggaca |
32274313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 13280647 - 13280756
Alignment:
| Q |
113 |
aatatatttggttaaaatatattttgtgcttataggaaattgttgctgaaattataattatggacatctcaattgtttagcctattgaagaaaaagctca |
212 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||| | ||||||| ||||| |||||||||||||| || |||||||||| | || |||| |||||| || |
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| T |
13280647 |
aatagatttggttaaaatatattttgtgtttatagaagattgttgatgaaaatataattatggacagctgaattgtttagtccatcgaagtaaaagcaca |
13280746 |
T |
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| Q |
213 |
tgcagaacaa |
222 |
Q |
| |
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|| ||||||| |
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| T |
13280747 |
tggagaacaa |
13280756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 235
Target Start/End: Original strand, 21006537 - 21006669
Alignment:
| Q |
103 |
ttatttttaaaatatatttggttaaaatatattttgtgcttataggaaattgttgctgaaattataattatggacatctcaattgtttagcctattgaag |
202 |
Q |
| |
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||||||| |||||| |||||| ||||||||||||||||| || | ||||||| ||||| |||||||||||| | || |||||||| ||| ||||||| |
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| T |
21006537 |
ttattttcaaaatagatttggaacaaatatattttgtgcttctaaaagattgttgttgaaaatataattatggatagctgaattgttttgcccattgaag |
21006636 |
T |
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| Q |
203 |
aaaaagctcatgcagaacaaagactatataagg |
235 |
Q |
| |
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|||||| |||| ||||||| | |||||||||| |
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| T |
21006637 |
aaaaagaccatgtagaacaatggctatataagg |
21006669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 178
Target Start/End: Complemental strand, 12310566 - 12310506
Alignment:
| Q |
118 |
atttggttaaaatatattttgtgcttataggaaattgttgctgaaattataattatggaca |
178 |
Q |
| |
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||||| || ||||||||||||||||| ||| | |||||||||||||||||| ||| ||||| |
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| T |
12310566 |
atttgtttcaaatatattttgtgcttctagaagattgttgctgaaattatacttaaggaca |
12310506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 222
Target Start/End: Complemental strand, 35656478 - 35656357
Alignment:
| Q |
100 |
aaattatttttaaaatatatttggttaaaatatattttgtgcttataggaaattgttgctgaaattataattatggacatctcaatt-gtttagcctatt |
198 |
Q |
| |
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|||| ||||| ||||||||||||| |||| | ||| |||||| ||| | ||| ||||||||| ||||||| |||||| | || | |||| ||||||| |
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| T |
35656478 |
aaatcattttcaaaatatatttggaaaaaaaaaatt--gtgcttgtagaagattattgctgaaaatataattgtggacagatgaaatcgtttggcctatt |
35656381 |
T |
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| Q |
199 |
gaagaaaaagctcatgcagaacaa |
222 |
Q |
| |
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||||||||| |||||||||||||| |
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| T |
35656380 |
gaagaaaaacctcatgcagaacaa |
35656357 |
T |
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