View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_high_5 (Length: 621)
Name: NF17385_high_5
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 13 - 491
Target Start/End: Original strand, 48360167 - 48360655
Alignment:
| Q |
13 |
tgaacggtttgtctccttagaccagtgtgtataagcccttcgccctttctagtttcaacggcgttcgttcattcttttcacaaatcttgttggaacgatt |
112 |
Q |
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| T |
48360167 |
tgaacggtttgtccccttagatcagtgtgtataagcccttcgccctttcaagtttcaacggcgttcgttcattcttttcacaaatcttgttggaacgatt |
48360266 |
T |
|
| Q |
113 |
ttccttcgtttgctgtcaaactaaattagggtttccaacttcttcaaggtattatttctttcttt----------tttaccaatcattcttctttattta |
202 |
Q |
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| T |
48360267 |
ttccttcgtttgctgtcaaactaaattagtgtttccaacttcttcaaggtattatttctttctttcactttgatttttaccaatcattcttctttattta |
48360366 |
T |
|
| Q |
203 |
tcaataatcaacatcattttgtaatgtttttccattatattgttaattcgattgtaattgtttttccaaatttccttttaattatttgtatcggtttatt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48360367 |
tcaataatcaacatcattttgtaatgtttttccattatattgttaattcgattgtaattgtttttccaaatttccttttaattatttgtatcggtttatt |
48360466 |
T |
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| Q |
303 |
ccgtaattggtttcttaattcccaaatttctttaatcaaagttgtaatttttaatatcaaattcatagtttcatacttcagattgaaagaaagcaactct |
402 |
Q |
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| T |
48360467 |
ccgtaattggtttcttaattcccaaatttctttaatcaaagttgtaatttttaatatcaaattcatagtttcatacttcagattgaaagaaagcaactct |
48360566 |
T |
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| Q |
403 |
ttgtcttctcgtgtttgattcttagttcctctttcgtcgtactttagatattcaatgtttgatttcttattgatgtatgatatctatca |
491 |
Q |
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| T |
48360567 |
ttgtcttctcgtgtttgattcttagttcctctttcgtcgtactttagatattcaatgtttgatttcttattgatgtatgatatctatca |
48360655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 9073450 - 9073514
Alignment:
| Q |
376 |
tacttcagattgaaagaaagcaactctttgtcttctcgtgtttgattcttagttcctctttcgtc |
440 |
Q |
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| T |
9073450 |
tacttcagattgaaagaaagcaactttttgtcttctcgtgtttgattcttagtttctttttcgtc |
9073514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 1599033 - 1599077
Alignment:
| Q |
313 |
tttcttaattcccaaatttctttaatcaaagttgtaatttttaat |
357 |
Q |
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| T |
1599033 |
tttcttaattcccaaatttctttaatcaaagttgtcatttttaat |
1599077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 9073371 - 9073419
Alignment:
| Q |
242 |
ttgttaattcgattgtaattgtttttccaaatttccttttaattatttg |
290 |
Q |
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| T |
9073371 |
ttgttaattcgattgtaattgtttttccaaatttcctttcgattatttg |
9073419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 8530563 - 8530474
Alignment:
| Q |
73 |
gcgttcgttcattcttttcacaaatcttgttggaacgattttccttcgtttgctgtcaaactaaattagggtttccaacttcttcaaggta |
163 |
Q |
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| T |
8530563 |
gcgttggttcattctttcaacaa-tattgttcgaacgcttttccctcgttttctgtcacaccaaattagggttcccaacttcttcaaggta |
8530474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 384 - 440
Target Start/End: Complemental strand, 8536898 - 8536845
Alignment:
| Q |
384 |
attgaaagaaagcaactctttgtcttctcgtgtttgattcttagttcctctttcgtc |
440 |
Q |
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| T |
8536898 |
attgaaagaaaccaactttttgtct---cgtgtttgattcttagtttctctttcgtc |
8536845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 305 - 357
Target Start/End: Complemental strand, 8530363 - 8530311
Alignment:
| Q |
305 |
gtaattggtttcttaattcccaaatttctttaatcaaagttgtaatttttaat |
357 |
Q |
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| T |
8530363 |
gtaattggttttttcattcccaaatttcttcaattaaacttgtcatttttaat |
8530311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 415 - 461
Target Start/End: Complemental strand, 9444477 - 9444431
Alignment:
| Q |
415 |
gtttgattcttagttcctctttcgtcgtactttagatattcaatgtt |
461 |
Q |
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| T |
9444477 |
gtttgattcttagttcctctttcatcattctttagatattcaatgtt |
9444431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 163
Target Start/End: Complemental strand, 9444668 - 9444579
Alignment:
| Q |
73 |
gcgttcgttcattcttttcacaaatcttgttggaacgattttccttcgtttgctgtcaaactaaattagggtttccaacttcttcaaggta |
163 |
Q |
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| T |
9444668 |
gcgttggttcattctttcaacaa-tattgttcgaacgcttttccctcattttctgtcacaccaaattagggttcccaacttcttcaaggta |
9444579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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