View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17385_high_6 (Length: 606)

Name: NF17385_high_6
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17385_high_6
NF17385_high_6
[»] chr3 (6 HSPs)
chr3 (38-584)||(45268809-45269352)
chr3 (59-101)||(5641613-5641655)
chr3 (67-101)||(48546202-48546236)
chr3 (67-101)||(53163623-53163657)
chr3 (69-101)||(8125668-8125700)
chr3 (65-101)||(29373454-29373490)
[»] scaffold1787 (1 HSPs)
scaffold1787 (58-101)||(429-472)
[»] chr7 (11 HSPs)
chr7 (58-101)||(14204301-14204344)
chr7 (38-101)||(21388552-21388615)
chr7 (38-101)||(47255060-47255123)
chr7 (463-517)||(16867523-16867577)
chr7 (463-517)||(16872283-16872337)
chr7 (67-101)||(21066915-21066949)
chr7 (64-101)||(27424868-27424905)
chr7 (69-101)||(15074911-15074943)
chr7 (453-517)||(16862123-16862187)
chr7 (469-517)||(17605064-17605112)
chr7 (59-95)||(25711158-25711194)
[»] chr5 (3 HSPs)
chr5 (38-101)||(39919071-39919134)
chr5 (67-101)||(12891586-12891620)
chr5 (67-101)||(26912862-26912896)
[»] chr4 (4 HSPs)
chr4 (58-101)||(15208551-15208594)
chr4 (55-101)||(19963811-19963857)
chr4 (67-101)||(33530822-33530856)
chr4 (68-101)||(42395256-42395289)
[»] chr2 (6 HSPs)
chr2 (38-101)||(38179223-38179286)
chr2 (59-101)||(1844846-1844888)
chr2 (48-98)||(20528163-20528213)
chr2 (67-101)||(44948625-44948659)
chr2 (67-99)||(32084873-32084905)
chr2 (59-95)||(32288408-32288444)
[»] chr1 (5 HSPs)
chr1 (58-101)||(14349673-14349716)
chr1 (67-101)||(33033155-33033189)
chr1 (67-101)||(42054362-42054396)
chr1 (58-99)||(35195637-35195678)
chr1 (67-95)||(24168614-24168642)
[»] chr8 (3 HSPs)
chr8 (55-101)||(13773387-13773433)
chr8 (64-101)||(43656065-43656102)
chr8 (58-102)||(14876600-14876644)
[»] chr6 (1 HSPs)
chr6 (68-101)||(14709028-14709061)


Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 38 - 584
Target Start/End: Original strand, 45268809 - 45269352
Alignment:
Q  38 ctcacacaatttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgcaattcattagaaatcatttaatcacttttaatgtgactg 137  Q
    |||||| |||||||||||| |||| | ||||||||||||| |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||     
T  45268809 ctcacataatttaaatatggagtgcatgaggttcgaaccc-ggtctctgcatataatatgcaattcattggaaatcatttaatcacttttaatgtgactt 45268907  T
Q  138 tcgattacttgttccaacttccaagaagccctgagctttggtttgcagaaaagagtagctaggctagtacaggctactcaagagtttacgaatcaatctc 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  45268908 tcgattacttgttccaacttccaagaagccctgagctttggtttgcagaaaagagtagctagggtagtacaggctacacaagagtttacgaatcaatctc 45269007  T
Q  238 aaatttcaaatgccaccacaaaataaaaaagagtacgtcacactcctcactcagtttccctaacatggaatgtgaaaagccatagtttagtattcctctt 337  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45269008 aaatttcaaatgccaccacaaaataaaaaagagt--gtcacactcctcactcagtttccctaatatggaatgtgaaaagccatagtttagtattcctctt 45269105  T
Q  338 tgcttttattgtcaatctaaacttcattacagacagtactcactactcagtcattcataaggttttatacttttatgttaagctacttcttcatggctaa 437  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  45269106 tgcttttattgtcaatctaaacttcattatagacagtactcactactcagtcattcataaggttttatacttttatgttaagctacttcttaatggctaa 45269205  T
Q  438 caaaattcctcgagcgaagccagttcacttcttcaagatcatacttactcaaaaccttcatcatggaaagcttgtaagccaatttgagttatagattgtt 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45269206 caaaattcctcgagcgaagccagttcacttcttcaagatcatacttactcaaaaccttcatcatggaaagcttgtaagccaatttgagttatagattgtt 45269305  T
Q  538 cctgtagtttctgtttttatatatcttataacataatgatgatgtaa 584  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  45269306 cctgtagtttctgtttttatatatcttataacataatgatgatgtaa 45269352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 101
Target Start/End: Original strand, 5641613 - 5641655
Alignment:
Q  59 gtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||| ||||||||||||||||| |||| |||||||||||||||    
T  5641613 gtgtccgaggttcgaaccccggcccctgcatataatatgcaat 5641655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 48546236 - 48546202
Alignment:
Q  67 ggttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||||||||||| |||||||||||||||||||||    
T  48546236 ggttcgaaccccgatccctacatataatatgcaat 48546202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 53163657 - 53163623
Alignment:
Q  67 ggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||||||||| ||||||||||||||||||||    
T  53163657 ggttcgaaccccggcccctacatataatatgcaat 53163623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 8125700 - 8125668
Alignment:
Q  69 ttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||||||||||||||| |||||||||||||||    
T  8125700 ttcgaaccccggtccctgcatataatatgcaat 8125668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 65 - 101
Target Start/End: Original strand, 29373454 - 29373490
Alignment:
Q  65 gaggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||||||||||| |||| |||||||||||||||    
T  29373454 gaggttcgaaccccggcccctgcatataatatgcaat 29373490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1787 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 472 - 429
Alignment:
Q  58 agtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||    
T  472 agtgtccgaggttcgaaccccggcccctgcatataatatgcaat 429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 14204344 - 14204301
Alignment:
Q  58 agtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||    
T  14204344 agtgtccgaggttcgaaccccagcccctacatataatatgcaat 14204301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 21388615 - 21388552
Alignment:
Q  38 ctcacacaatttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||||||||| | || ||||| || ||||||||||||||  ||| |||||||||||||||    
T  21388615 ctcacacaatttaattgtggagtgtccggggttcgaaccccggctcctgcatataatatgcaat 21388552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 47255060 - 47255123
Alignment:
Q  38 ctcacacaatttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||||||||| | |||||||| || ||||||||||||||  ||| || ||||||||||||    
T  47255060 ctcacacaatttaattgtgaagtgtccggggttcgaaccccggctcctgcagataatatgcaat 47255123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 517
Target Start/End: Original strand, 16867523 - 16867577
Alignment:
Q  463 cacttcttcaagatcatacttactcaaaaccttcatcatggaaagcttgtaagcc 517  Q
    ||||| ||||||||||||||| ||||||| |||||| | ||||| ||||||||||    
T  16867523 cactttttcaagatcatacttgctcaaaatcttcatgaaggaaaacttgtaagcc 16867577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 463 - 517
Target Start/End: Original strand, 16872283 - 16872337
Alignment:
Q  463 cacttcttcaagatcatacttactcaaaaccttcatcatggaaagcttgtaagcc 517  Q
    ||||| |||||||| |||||| ||||||| |||||| | ||||||||||||||||    
T  16872283 cactttttcaagataatacttgctcaaaatcttcatgaaggaaagcttgtaagcc 16872337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 21066949 - 21066915
Alignment:
Q  67 ggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||||||||| ||||||||||||||||||||    
T  21066949 ggttcgaaccccggcccctacatataatatgcaat 21066915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 27424905 - 27424868
Alignment:
Q  64 cgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  27424905 cgaggttcgaaccccggcccctgcatataatatgcaat 27424868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 69 - 101
Target Start/End: Original strand, 15074911 - 15074943
Alignment:
Q  69 ttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||||||||||||||| |||||||||||||||    
T  15074911 ttcgaaccccggtccctgcatataatatgcaat 15074943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 453 - 517
Target Start/End: Original strand, 16862123 - 16862187
Alignment:
Q  453 gaagccagttcacttcttcaagatcatacttactcaaaaccttcatcatggaaagcttgtaagcc 517  Q
    ||||||| | ||||| |||||||| |||||| ||||||| |||||  | ||||||||||||||||    
T  16862123 gaagccaatccactttttcaagataatacttgctcaaaatcttcaggaaggaaagcttgtaagcc 16862187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 517
Target Start/End: Original strand, 17605064 - 17605112
Alignment:
Q  469 ttcaagatcatacttactcaaaaccttcatcatggaaagcttgtaagcc 517  Q
    ||||||||||||||| ||||||||||||  || ||||| ||||||||||    
T  17605064 ttcaagatcatacttgctcaaaaccttctccaaggaaaccttgtaagcc 17605112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 95
Target Start/End: Original strand, 25711158 - 25711194
Alignment:
Q  59 gtgtacgaggttcgaaccccggtccctacatataata 95  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  25711158 gtgtccgaggttcgaaccccggcccctacatataata 25711194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 39919071 - 39919134
Alignment:
Q  38 ctcacacaatttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||||||||| | || ||||| || ||||||||||||||  ||| |||||||||||||||    
T  39919071 ctcacacaatttaattgtggagtgtccggggttcgaaccccggctcctgcatataatatgcaat 39919134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 12891620 - 12891586
Alignment:
Q  67 ggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||||||||| ||||||||||||||||||||    
T  12891620 ggttcgaaccccggcccctacatataatatgcaat 12891586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 26912896 - 26912862
Alignment:
Q  67 ggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||||||||| ||||||||||||||||||||    
T  26912896 ggttcgaaccccggcccctacatataatatgcaat 26912862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 15208594 - 15208551
Alignment:
Q  58 agtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||    
T  15208594 agtgtccgaggttcgaaccccggttcctatatataatatgcaat 15208551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 19963857 - 19963811
Alignment:
Q  55 tgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||| ||||||||||||||||  |||| |||||||||||||||    
T  19963857 tgaagtgtccgaggttcgaaccccgacccctgcatataatatgcaat 19963811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 33530856 - 33530822
Alignment:
Q  67 ggttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||||||||||| |||||||||||||||||||||    
T  33530856 ggttcgaaccccgatccctacatataatatgcaat 33530822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 101
Target Start/End: Complemental strand, 42395289 - 42395256
Alignment:
Q  68 gttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||||||||||| ||||||||||||||||||||    
T  42395289 gttcgaaccccggcccctacatataatatgcaat 42395256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 101
Target Start/End: Original strand, 38179223 - 38179286
Alignment:
Q  38 ctcacacaatttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||||||||| | || ||||| ||||||||||||||| | |||| ||||||| |||||||    
T  38179223 ctcacacaatttaattgtggagtgtccgaggttcgaaccccagcccctgcatataaaatgcaat 38179286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 1844888 - 1844846
Alignment:
Q  59 gtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||| ||||||||||||||||| |||| |||||||||||||||    
T  1844888 gtgtccgaggttcgaaccccggcccctgcatataatatgcaat 1844846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 48 - 98
Target Start/End: Original strand, 20528163 - 20528213
Alignment:
Q  48 ttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgc 98  Q
    |||||| ||||||||  |||||||||||||| |||||||||||||| ||||    
T  20528163 ttaaatgtgaagtgtctgaggttcgaaccccagtccctacatataacatgc 20528213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 44948659 - 44948625
Alignment:
Q  67 ggttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||||||||||||||||| |||||||||||||||    
T  44948659 ggttcgaaccccggtccctgcatataatatgcaat 44948625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 99
Target Start/End: Complemental strand, 32084905 - 32084873
Alignment:
Q  67 ggttcgaaccccggtccctacatataatatgca 99  Q
    |||||||||||||| ||||||||||||||||||    
T  32084905 ggttcgaaccccggcccctacatataatatgca 32084873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 59 - 95
Target Start/End: Complemental strand, 32288444 - 32288408
Alignment:
Q  59 gtgtacgaggttcgaaccccggtccctacatataata 95  Q
    |||| |||||||||||||||| |||||||||||||||    
T  32288444 gtgtccgaggttcgaaccccgatccctacatataata 32288408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 14349716 - 14349673
Alignment:
Q  58 agtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||| || ||||||||||||| |||||||||||||||||||||    
T  14349716 agtgtccggggttcgaaccccgatccctacatataatatgcaat 14349673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 33033189 - 33033155
Alignment:
Q  67 ggttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||||||||||||||||| |||||||||||||||    
T  33033189 ggttcgaaccccggtccctgcatataatatgcaat 33033155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 101
Target Start/End: Complemental strand, 42054396 - 42054362
Alignment:
Q  67 ggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||||||||| ||||||||||||||||||||    
T  42054396 ggttcgaaccccggcccctacatataatatgcaat 42054362  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 35195637 - 35195678
Alignment:
Q  58 agtgtacgaggttcgaaccccggtccctacatataatatgca 99  Q
    |||||||| ||||||||||| ||||||| |||||||||||||    
T  35195637 agtgtacggggttcgaaccctggtccctgcatataatatgca 35195678  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 67 - 95
Target Start/End: Original strand, 24168614 - 24168642
Alignment:
Q  67 ggttcgaaccccggtccctacatataata 95  Q
    |||||||||||||||||||||||||||||    
T  24168614 ggttcgaaccccggtccctacatataata 24168642  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 13773387 - 13773433
Alignment:
Q  55 tgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    |||||||| || ||||||||||||||  |||||||||||||||||||    
T  13773387 tgaagtgtccggggttcgaaccccggctcctacatataatatgcaat 13773433  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 101
Target Start/End: Complemental strand, 43656102 - 43656065
Alignment:
Q  64 cgaggttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  43656102 cgaggttcgaaccccgacccctacatataatatgcaat 43656065  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 14876600 - 14876644
Alignment:
Q  58 agtgtacgaggttcgaaccccggtccctacatataatatgcaatt 102  Q
    ||||| |||||||||||||||||  ||| ||||||||||||||||    
T  14876600 agtgtccgaggttcgaaccccggctcctgcatataatatgcaatt 14876644  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 14709028 - 14709061
Alignment:
Q  68 gttcgaaccccggtccctacatataatatgcaat 101  Q
    ||||||||||||| ||||||||||||||||||||    
T  14709028 gttcgaaccccggcccctacatataatatgcaat 14709061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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