View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17385_low_11 (Length: 548)
Name: NF17385_low_11
Description: NF17385
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17385_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 543
Target Start/End: Original strand, 39483265 - 39483825
Alignment:
| Q |
1 |
aagccatacaaacctacaacttcccaccgggaattctcccaataggagtaaccaattacgaattagacaaatcaagtggaaatttccgcgctgatctaaa |
100 |
Q |
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| T |
39483265 |
aagccttacgaacctacaacttcccaccgggaattctcccaataggagtaaccaattacgaattagacaaatcaagtggaaatttccgcgctgatctaaa |
39483364 |
T |
|
| Q |
101 |
ccgttcgtgcagtttttcgttacaaggttcgtatcaattgagttacaaatcaacgatcaccggtaaaataacggaaaacagacttaccgatctcaggggt |
200 |
Q |
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| T |
39483365 |
tcgttcgtgcagtttttcgttacaaggttcgtatcaattgagttacaaatcaacgatcaccggtaaaataacggaaaacagacttaccgatctcaggggt |
39483464 |
T |
|
| Q |
201 |
ataagtgtcaaagtgatgttcttctgggtgaatattcttgaagttgttaggaaaagtgataatcttgatttctctgttggtgttgcttctgcggcttttc |
300 |
Q |
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| T |
39483465 |
ataagtgtcaaagtgatgttcttctgggtgaatattcttgaagttgttaggaaaagtgataatcttgatttctctgttggtgttgcttctgcggcttttc |
39483564 |
T |
|
| Q |
301 |
ctttggataatttctttgaatctccgcagtgtggctgtggtttggattgtgatcctttgagaattagaaaacttaaattgaatactaaaaacccttctct |
400 |
Q |
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| T |
39483565 |
ctttggatgatttctttgaatctccgcagtgtggctgtggtttggattgtgatcctttgagaattagaaaacttaaattgaatactaaaaacccttctct |
39483664 |
T |
|
| Q |
401 |
ttcttcttcttaagatgtttttcacctttgg----------tcgaagacgtgtttggtgtccgacata--------tgtacacaccaacaaatgtgaatt |
482 |
Q |
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|||||||||||||||||||||||||| |||| |||||||||||| |||||| ||||||| ||||| |||||||||||||||||| |
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| T |
39483665 |
ttcttcttcttaagatgtttttcacccttggccacttttcatcgaagacgtgtctggtgtgcgacatatgtcagtgtgtacgcaccaacaaatgtgaatt |
39483764 |
T |
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| Q |
483 |
gtgtcattttacaaattattatcgtgtcaatatgtcatggtgtatggtatgtgtctctgct |
543 |
Q |
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| T |
39483765 |
gtgtcattttacaaattattatcgtgtcaatatgtcatggtgtatggtatgtgtctctgct |
39483825 |
T |
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